Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_D13
         (602 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81461-2|CAB03835.1|  135|Caenorhabditis elegans Hypothetical pr...   104   6e-23
U41549-2|AAA83282.1|  208|Caenorhabditis elegans Histone h1 like...    30   1.5  
AF012253-1|AAB66471.1|  208|Caenorhabditis elegans histone H1.3 ...    30   1.5  
Z72516-2|CAA96689.2|  513|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical p...    29   3.4  
U00068-1|AAA50745.1|   85|Caenorhabditis elegans Hypothetical pr...    28   5.9  

>Z81461-2|CAB03835.1|  135|Caenorhabditis elegans Hypothetical
           protein C04F12.4 protein.
          Length = 135

 Score =  104 bits (249), Expect = 6e-23
 Identities = 53/121 (43%), Positives = 76/121 (62%)
 Frame = -2

Query: 457 MPFARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKF 278
           M F R V+ GRV  +A G  +GKL ++V+VID  R  +DGP S V R    L  L LTKF
Sbjct: 1   MVFNRVVQIGRVVFIASGKDQGKLAAIVNVIDGNRVQIDGPSSDVTRTVRNLKDLQLTKF 60

Query: 277 RLKYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRN 98
            LK      T+ V+ A+  AK+ E + ++QWA+K+A +  RA++TD++R+KL  A+  RN
Sbjct: 61  VLKLRVGQRTKGVKAAFDAAKVTENFQKTQWAKKIAQRAIRAKLTDFERYKLMKAKQMRN 120

Query: 97  R 95
           R
Sbjct: 121 R 121


>U41549-2|AAA83282.1|  208|Caenorhabditis elegans Histone h1 like
           protein 3 protein.
          Length = 208

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = -2

Query: 283 KFRL--KYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAAR 110
           +FR+  K A  A   + +KA T     EK  +   AQK A  EK+A+ T   + K TA +
Sbjct: 108 RFRVTEKKAAAAKKPVAKKAAT----GEKKAKKPVAQKAATGEKKAKKTTATKTKKTADK 163

Query: 109 VKRNRARTAVFK 74
           VK+ ++   + K
Sbjct: 164 VKKVKSPKKIAK 175


>AF012253-1|AAB66471.1|  208|Caenorhabditis elegans histone H1.3
           protein.
          Length = 208

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = -2

Query: 283 KFRL--KYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAAR 110
           +FR+  K A  A   + +KA T     EK  +   AQK A  EK+A+ T   + K TA +
Sbjct: 108 RFRVTEKKAAAAKKPVAKKAAT----GEKKAKKPVAQKAATGEKKAKKTTATKTKKTADK 163

Query: 109 VKRNRARTAVFK 74
           VK+ ++   + K
Sbjct: 164 VKKVKSPKKIAK 175


>Z72516-2|CAA96689.2|  513|Caenorhabditis elegans Hypothetical
           protein T25G3.3 protein.
          Length = 513

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 20/68 (29%), Positives = 30/68 (44%)
 Frame = -1

Query: 227 DRC*TQ*KMDRKSMGPEVSEQREARTNDRLR*VQVNSCTS*EEPCQDCRIQELEGEGCAC 48
           D C    +   K +  +++ Q+E  TN  L+   V   T   + C DCR  E +    AC
Sbjct: 95  DACFVWTEAHSKRIKVKITIQKEVFTNTILQQAVVVEFTVHSQLCDDCRRAEAKDFWRAC 154

Query: 47  WDLRQEKE 24
             +RQ  E
Sbjct: 155 VQVRQRAE 162


>Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical
           protein Y49E10.19 protein.
          Length = 1159

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 196 ESQWAQKLANKEKRAQMTDYDRFKLTAARV 107
           E+QWA     ++ RA +T+YDR K    R+
Sbjct: 807 EAQWAMLRHVEKHRALLTEYDRLKRDGPRI 836


>U00068-1|AAA50745.1|   85|Caenorhabditis elegans Hypothetical
           protein W04D12.1 protein.
          Length = 85

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 211 NEKWTESQWAQKLANKEKRAQMTDYDRFK 125
           N KW     A K+A KEK+ +M D ++ K
Sbjct: 43  NRKWKRIDSAVKVAKKEKKKKMKDEEKKK 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,875,905
Number of Sequences: 27780
Number of extensions: 271669
Number of successful extensions: 727
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)