Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_D12
         (346 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.01c |lsm2||U6 snRNP-associated protein core protein|Sch...   111   3e-26
SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch...    43   1e-05
SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyc...    41   5e-05
SPBC3E7.14 |smf1|SPBC4F6.01|Sm snRNP core protein Smf1|Schizosac...    37   8e-04
SPAC2F3.17c |lsm6||U6 snRNP-associated protein Lsm6|Schizosaccha...    34   0.007
SPBC20F10.09 |lsm5||U6 snRNP-associated protein Lsm5|Schizosacch...    32   0.029
SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha...    30   0.088
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    27   0.82 
SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo...    26   1.4  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    25   4.4  
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    24   5.8  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    24   5.8  
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos...    24   7.6  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    24   7.6  
SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ...    24   7.6  
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    24   7.6  

>SPCC1620.01c |lsm2||U6 snRNP-associated protein core
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 96

 Score =  111 bits (267), Expect = 3e-26
 Identities = 57/98 (58%), Positives = 72/98 (73%), Gaps = 1/98 (1%)
 Frame = -3

Query: 314 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNC 135
           MLFYSFFK+L+  +V VELKND+SI G L SVDQ+LN+KL +ISV+D+ KYPHM +VK+ 
Sbjct: 1   MLFYSFFKTLIDTEVTVELKNDMSIRGILKSVDQFLNVKLENISVVDASKYPHMAAVKDL 60

Query: 134 FIRGSVVRYVQLPADEGDT-QLXPGCREKGGDRCNKRE 24
           FIRGSVVRYV + +   DT  L   CR    +  NKR+
Sbjct: 61  FIRGSVVRYVHMSSAYVDTILLADACRRDLAN--NKRQ 96


>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
           Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 43.2 bits (97), Expect = 1e-05
 Identities = 21/74 (28%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
 Frame = -3

Query: 314 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLSDI--SVIDSEKYPHMLSVK 141
           ML  +   +  G+ ++VELKN  +  G L + D Y+N+ L ++  ++ D +K+     + 
Sbjct: 1   MLPLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKF---FRLP 57

Query: 140 NCFIRGSVVRYVQL 99
            C+IRG+ ++Y+++
Sbjct: 58  ECYIRGNNIKYLRI 71


>SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 117

 Score = 41.1 bits (92), Expect = 5e-05
 Identities = 24/73 (32%), Positives = 36/73 (49%)
 Frame = -3

Query: 314 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNC 135
           M    F   L  + V +ELKN   + GT+ SVD  +N  L  + +    + P  + V+  
Sbjct: 1   MKLVRFLMKLTNETVSIELKNGTIVHGTITSVDMQMNTHLKAVKMTVKGREP--VPVETL 58

Query: 134 FIRGSVVRYVQLP 96
            IRG+ +RY  LP
Sbjct: 59  SIRGNNIRYYILP 71


>SPBC3E7.14 |smf1|SPBC4F6.01|Sm snRNP core protein
           Smf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 78

 Score = 37.1 bits (82), Expect = 8e-04
 Identities = 17/35 (48%), Positives = 23/35 (65%)
 Frame = -3

Query: 299 FFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKL 195
           F + L+GK V+V LK      GTL SVD Y+N++L
Sbjct: 11  FLQGLIGKPVLVRLKWGQEYKGTLQSVDSYMNLQL 45


>SPAC2F3.17c |lsm6||U6 snRNP-associated protein
           Lsm6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 75

 Score = 33.9 bits (74), Expect = 0.007
 Identities = 19/65 (29%), Positives = 33/65 (50%)
 Frame = -3

Query: 299 FFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNCFIRGS 120
           F   ++GK V++ L + +   G L  +D Y+N+ L       + K  ++    + FIRG+
Sbjct: 8   FLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYG--DAFIRGN 65

Query: 119 VVRYV 105
            V YV
Sbjct: 66  NVLYV 70


>SPBC20F10.09 |lsm5||U6 snRNP-associated protein
           Lsm5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 80

 Score = 31.9 bits (69), Expect = 0.029
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
 Frame = -3

Query: 284 VGKDVVVELKNDLSICGTLHSVDQYLNIKLSDISVID-----SEKYPHML 150
           +G ++ V +K++    GTL   D Y+NI L D++  D     +EK+  ML
Sbjct: 15  IGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSEML 64


>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
           Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 93

 Score = 30.3 bits (65), Expect = 0.088
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
 Frame = -3

Query: 272 VVVELKNDLSICGTLHSVDQYLNIKLSD----ISVIDSEK 165
           V V+L+ D  + G LH+ D++LN+ L D    +++ D E+
Sbjct: 22  VYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEE 61


>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 27.1 bits (57), Expect = 0.82
 Identities = 13/55 (23%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
 Frame = -3

Query: 245 SICGTLHSVDQYLNIKLSDISVIDSEKY-----PHMLSVKNCFIRGSVVRYVQLP 96
           SIC   +S +QY+ +KL  ++++    +     PH+ ++K+  + G   +++  P
Sbjct: 42  SICKPNNSEEQYVILKLDKLALVTDITFGKFHTPHLCNLKDFIVYGGREQHLMFP 96


>SPAC22F3.12c |rgs1||regulator of G-protein signaling
           Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -3

Query: 170 EKYPHMLSVKNCFIRGSVVRYVQLPAD 90
           E + H   + NCF+  +    V LP+D
Sbjct: 398 ESFAHACGIYNCFLSSNAPNAVNLPSD 424


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 2   CXGRFGSVLSCCNGRLLSRGI 64
           C G F  +L+CCN  L ++ +
Sbjct: 921 CSGTFSCLLACCNSVLRTQNL 941


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 168 FRVNHAYIRKLYIEILIHRMQRPTYAEVIFQLDDY 272
           FR+N +  +K +  I  HR+  PT A  +F   DY
Sbjct: 41  FRLNVSNSKKCFDTISGHRITLPTNARGLFTGYDY 75


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 12/47 (25%), Positives = 26/47 (55%)
 Frame = -3

Query: 344 QRVFKQTKRKMLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLN 204
           QR+FK+T  ++  +S+F+ L+  ++ +     +   G   +V  +LN
Sbjct: 492 QRIFKKTILRLSAFSYFQRLIDHNMQIYDDETIQKAGEA-TVSSWLN 537


>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 400

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = +3

Query: 177 NHAYIRKLYIEILIHR 224
           N+AY+RKL+ ++LI +
Sbjct: 266 NYAYLRKLFRDLLIRK 281


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 269 LHPYRLTI*KTSKTTFF 319
           L PYRL +  T+K TFF
Sbjct: 407 LIPYRLQVFATAKVTFF 423


>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 281 GKDVVVELKNDLSICGTLH-SVDQYLNIKLSD 189
           GK ++V   +D  +CG +H S+ + +  +L D
Sbjct: 94  GKTLMVACSSDKGLCGGIHSSISRLIRRELHD 125


>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 7   WSVRFSSLLLQRSPPFSRHPGXSWVSPS 90
           W+ R SSLL++++P   +     W+ PS
Sbjct: 29  WA-RISSLLVRKTPKQCKARWYEWIDPS 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,348,495
Number of Sequences: 5004
Number of extensions: 24599
Number of successful extensions: 72
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)