Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_D12
         (346 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0357 + 3140610-3140612,3140742-3140900,3141027-3141068           92   1e-19
01_01_1089 - 8560008-8560220,8560456-8560977,8561095-8561283,856...    45   2e-05
02_04_0403 - 22622014-22622075,22622159-22622350,22624834-226249...    38   0.002
04_04_0192 - 23471346-23471572,23473004-23473195,23474342-234744...    37   0.004
02_01_0576 - 4270808-4270871,4271548-4271612,4271717-4271754,427...    36   0.011
01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297     33   0.060
12_01_0089 - 707260-707317,707626-708050,708663-709621,710223-71...    30   0.56 
05_04_0169 - 18694418-18694453,18694516-18694627,18696095-186962...    29   0.74 
02_01_0022 - 135655-135717,137426-137482,137559-137678,137762-13...    28   1.7  
03_02_0318 + 7417361-7417519,7417638-7417690,7417770-7417836,741...    28   2.3  
03_06_0321 + 33112793-33113026,33113166-33113546                       27   5.2  
01_01_1211 + 9753518-9753894,9754265-9754313,9754747-9754773           27   5.2  
05_07_0059 + 27402365-27402733,27402848-27402982,27403070-274031...    26   6.9  
01_07_0382 + 43188478-43190919                                         26   6.9  
12_02_0957 + 24807261-24807311,24807436-24807773,24808727-248089...    26   9.1  
12_01_0220 - 1657554-1657620,1657943-1658109,1658110-1658267,165...    26   9.1  
10_08_0181 - 15507578-15507610,15507722-15507872,15508430-15510339     26   9.1  
05_05_0369 + 24461001-24462455                                         26   9.1  

>08_01_0357 + 3140610-3140612,3140742-3140900,3141027-3141068
          Length = 67

 Score = 91.9 bits (218), Expect = 1e-19
 Identities = 42/62 (67%), Positives = 51/62 (82%)
 Frame = -3

Query: 314 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNC 135
           MLF+S+FK LVGK+V VELKNDL+I GTLHSVDQYLNIKL +  V+D +KYPHM +   C
Sbjct: 1   MLFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMQT--QC 58

Query: 134 FI 129
           F+
Sbjct: 59  FL 60


>01_01_1089 -
           8560008-8560220,8560456-8560977,8561095-8561283,
           8561377-8561642,8561967-8562111,8562411-8562530,
           8562611-8562930,8564161-8564341,8564434-8564580,
           8565186-8565497,8566303-8566450,8566592-8566765,
           8567385-8567446,8567499-8567571,8567628-8567683,
           8568370-8568645,8569541-8569588,8569870-8569991,
           8570258-8570413,8571037-8571079,8572624-8572701,
           8572972-8573070,8573168-8573209,8573302-8573304
          Length = 1264

 Score = 44.8 bits (101), Expect = 2e-05
 Identities = 23/73 (31%), Positives = 42/73 (57%)
 Frame = -3

Query: 314 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNC 135
           ML  S  K+  G  ++VELKN  +  G L + D ++NI L ++ +  S+       +  C
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREV-ICTSKDGDKFWRMPEC 59

Query: 134 FIRGSVVRYVQLP 96
           +IRG+ ++Y+++P
Sbjct: 60  YIRGNTIKYLRVP 72


>02_04_0403 -
           22622014-22622075,22622159-22622350,22624834-22624910,
           22625026-22625039
          Length = 114

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 22/73 (30%), Positives = 36/73 (49%)
 Frame = -3

Query: 314 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNC 135
           M    F   L  + V +ELKN  ++ GT+  VD  +N  L  + +    K P  ++  + 
Sbjct: 1   MKLVRFLMKLNNETVTIELKNGTTVHGTITGVDISMNTHLKTVKLTLKGKNP--VTFDHL 58

Query: 134 FIRGSVVRYVQLP 96
            +RG+ +RY  LP
Sbjct: 59  SVRGNNIRYYILP 71


>04_04_0192 -
           23471346-23471572,23473004-23473195,23474342-23474418,
           23475810-23475850,23475928-23475974,23476108-23476194,
           23476807-23477011,23477747-23477866
          Length = 331

 Score = 37.1 bits (82), Expect = 0.004
 Identities = 21/68 (30%), Positives = 35/68 (51%)
 Frame = -3

Query: 299 FFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNCFIRGS 120
           F   L  + V +ELKN   + GT+  VD  +N  L  + +    K P  +++ +  +RG+
Sbjct: 168 FLMKLNNETVTIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNP--VTLDHLSVRGN 225

Query: 119 VVRYVQLP 96
            +RY  LP
Sbjct: 226 NIRYYILP 233


>02_01_0576 -
           4270808-4270871,4271548-4271612,4271717-4271754,
           4272060-4272147,4272507-4272625,4273682-4273721
          Length = 137

 Score = 35.5 bits (78), Expect = 0.011
 Identities = 16/37 (43%), Positives = 25/37 (67%)
 Frame = -3

Query: 299 FFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLSD 189
           F  +L GK V+V+LK  +   G L SVD Y+N++L++
Sbjct: 62  FLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLAN 98


>01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297
          Length = 104

 Score = 33.1 bits (72), Expect = 0.060
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 11/70 (15%)
 Frame = -3

Query: 272 VVVELKNDLSICGTLHSVDQYLNIKLSDIS------VIDSEKYPHML-----SVKNCFIR 126
           + V+L++D  + G LH+ DQ+LN+ L D+        ID E Y  ++     ++   F+R
Sbjct: 31  IYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTKRTIPFLFVR 90

Query: 125 GSVVRYVQLP 96
           G  V  V  P
Sbjct: 91  GDGVILVSPP 100


>12_01_0089 -
           707260-707317,707626-708050,708663-709621,710223-710408,
           710502-710604,710701-710883,710932-711012,711072-711164,
           711650-711832,713751-713966
          Length = 828

 Score = 29.9 bits (64), Expect = 0.56
 Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +3

Query: 186 YIRKLYIEILIHRMQRPTYAEVIFQL-DDYILTD*RFEK 299
           ++ K+Y+ ++ H++  P Y  V+ QL DD+   D +FEK
Sbjct: 161 FLEKIYLGLIYHKL-GPLYFLVVQQLVDDFFKVDQKFEK 198


>05_04_0169 -
           18694418-18694453,18694516-18694627,18696095-18696243,
           18696980-18697033,18697110-18697222,18697323-18697374
          Length = 171

 Score = 29.5 bits (63), Expect = 0.74
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 284 VGKDVVVELKNDLSICGTLHSVDQYLNIKLSDIS 183
           +G  + V +K D  + GTL   D Y+N+ L D++
Sbjct: 88  IGSKIWVIMKGDKELVGTLCGFDVYVNMVLEDVT 121


>02_01_0022 -
           135655-135717,137426-137482,137559-137678,137762-137920
          Length = 132

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 19/62 (30%), Positives = 33/62 (53%)
 Frame = -3

Query: 281 GKDVVVELKNDLSICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNCFIRGSVVRYVQ 102
           G  V VELK      G++   +   N +L +I+   + K   +  +++ FIRGS VR++ 
Sbjct: 17  GHVVTVELKTGEVYRGSMVECEDNWNCQLDNITF--TAKDGKVSQLEHVFIRGSRVRFMI 74

Query: 101 LP 96
           +P
Sbjct: 75  IP 76


>03_02_0318 +
           7417361-7417519,7417638-7417690,7417770-7417836,
           7417925-7417981,7420005-7420067
          Length = 132

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 19/62 (30%), Positives = 32/62 (51%)
 Frame = -3

Query: 281 GKDVVVELKNDLSICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNCFIRGSVVRYVQ 102
           G  V VELK      G +   +   N +L +I+   + K   +  +++ FIRGS VR++ 
Sbjct: 17  GHVVTVELKTGEVYRGAMVECEDNWNCQLDNITF--TAKDGKVSQLEHVFIRGSRVRFMI 74

Query: 101 LP 96
           +P
Sbjct: 75  IP 76


>03_06_0321 + 33112793-33113026,33113166-33113546
          Length = 204

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -3

Query: 161 PHMLSVKNCFIRGSVVRYVQLPADEGDTQLXP 66
           P+ +SV N F  G+V RY+Q+ +DE    L P
Sbjct: 55  PNFVSVDN-FAFGAVARYIQVNSDECYKLLEP 85


>01_01_1211 + 9753518-9753894,9754265-9754313,9754747-9754773
          Length = 150

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +1

Query: 43  SPPFSRHPGXSWVSPSSAGSCTYRTTEPLIK 135
           SPP SR  G +  S SS G C  R   P +K
Sbjct: 83  SPPTSRGSGGAAASGSSYGRCFSRPQPPSMK 113


>05_07_0059 +
           27402365-27402733,27402848-27402982,27403070-27403183,
           27403297-27403449,27403544-27403644,27403945-27404041,
           27404542-27404651,27404775-27404878,27405129-27405308,
           27405398-27405741,27405841-27405905,27405981-27406450,
           27406939-27407793,27408045-27408116,27408475-27408575,
           27409069-27409170,27409295-27409456,27409665-27411230,
           27411384-27411602,27413924-27414198,27414291-27414596,
           27414727-27415012,27415085-27415087,27415162-27415416,
           27415537-27415803
          Length = 2236

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 234 DVAFCGSISQYKAFGYKRD 178
           D+  CG ++  KAFGY R+
Sbjct: 577 DMGICGILTPLKAFGYTRE 595


>01_07_0382 + 43188478-43190919
          Length = 813

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 11/44 (25%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -3

Query: 284 VGKDVVVELKNDLSICGTLHSVDQYLN-IKLSDISVIDSEKYPH 156
           + +D  + +  +L +CG  H+V ++++ +K   I V D+ ++ H
Sbjct: 758 LSEDKTIFVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHH 801


>12_02_0957 +
           24807261-24807311,24807436-24807773,24808727-24808927,
           24809024-24809069,24809284-24809600,24809949-24810072,
           24810465-24810537,24810968-24811173,24811384-24811651,
           24811780-24811877,24812116-24812379
          Length = 661

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 118 WFDTYNCRLMRETPSCXQDAARKEATVA 35
           W D + C L++E   C  +A++ +  VA
Sbjct: 499 WLDFFRCNLLQEGDICVFEASKSKRGVA 526


>12_01_0220 -
           1657554-1657620,1657943-1658109,1658110-1658267,
           1658362-1658447,1658559-1658808,1659194-1660320,
           1662207-1662351,1663555-1663696,1663775-1663828,
           1663914-1663985,1664710-1664778,1664885-1664926,
           1665024-1665092,1665257-1665394,1665518-1665628,
           1665704-1665836,1666834-1666889,1667191-1667901
          Length = 1198

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +1

Query: 283 TNDLKNE*NNIFRFVCLK 336
           +++LKNE N +F+ +CLK
Sbjct: 437 SDELKNEANTLFKRICLK 454


>10_08_0181 - 15507578-15507610,15507722-15507872,15508430-15510339
          Length = 697

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 266 VELKNDLSICGTLHSVDQYLN-IKLSDISVIDSEKYPHMLS 147
           + +  ++ ICG  HS  +Y++ +   +I V D+ ++ H  S
Sbjct: 588 IRIMKNIRICGDCHSAFRYISKVFKREIVVRDTNRFHHFSS 628


>05_05_0369 + 24461001-24462455
          Length = 484

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = +2

Query: 35  CNGRLLSRGILVAAGCLPHQPAVVRI-EP 118
           CNG    RG  V   CLP  PAV  + EP
Sbjct: 239 CNG-FAKRGYYVGPLCLPQPPAVASVGEP 266


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,395,026
Number of Sequences: 37544
Number of extensions: 149420
Number of successful extensions: 485
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)