Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_D12
(346 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR542157-1|CAG46954.1| 95|Homo sapiens LSM2 protein. 162 3e-40
CR542146-1|CAG46943.1| 95|Homo sapiens LSM2 protein. 162 3e-40
BC009192-1|AAH09192.1| 95|Homo sapiens LSM2 homolog, U6 small ... 162 3e-40
BA000025-11|BAB63302.1| 95|Homo sapiens small nuclear ribonucl... 162 3e-40
AL929592-3|CAI18462.1| 95|Homo sapiens LSM2 homolog, U6 small ... 162 3e-40
AL671762-3|CAI18212.1| 95|Homo sapiens LSM2 homolog, U6 small ... 162 3e-40
AL662834-14|CAI17733.1| 95|Homo sapiens LSM2 homolog, U6 small... 162 3e-40
AJ245416-1|CAB52190.1| 95|Homo sapiens G7b protein protein. 162 3e-40
AF196468-1|AAG33023.1| 95|Homo sapiens SMX5-like protein protein. 162 3e-40
AF182288-1|AAD56226.1| 95|Homo sapiens U6 snRNA-associated Sm-... 162 3e-40
AF136977-1|AAG49438.1| 95|Homo sapiens snRNP core SM-like prot... 162 3e-40
AF134726-9|AAD21818.1| 95|Homo sapiens snRNP protein. 162 3e-40
BC023665-1|AAH23665.1| 139|Homo sapiens LSM4 homolog, U6 small ... 46 3e-05
BC022198-1|AAH22198.1| 139|Homo sapiens LSM4 homolog, U6 small ... 46 3e-05
BC003652-1|AAH03652.1| 139|Homo sapiens LSM4 homolog, U6 small ... 46 3e-05
BC000387-1|AAH00387.1| 139|Homo sapiens LSM4 homolog, U6 small ... 46 3e-05
AJ238096-1|CAB45867.1| 139|Homo sapiens Lsm4 protein protein. 46 3e-05
AF251218-1|AAF90055.1| 139|Homo sapiens LSm4 autoantigen protein. 46 3e-05
AF182290-1|AAD56228.1| 139|Homo sapiens U6 snRNA-associated Sm-... 46 3e-05
AF117235-1|AAF17216.1| 139|Homo sapiens glycine-rich protein pr... 46 3e-05
AJ577268-1|CAE11897.1| 119|Homo sapiens small nuclear ribonucle... 39 0.004
L36188-1|AAA85339.1| 119|Homo sapiens small nuclear ribonucleop... 38 0.008
J03798-1|AAA36620.1| 119|Homo sapiens protein ( Human autoantig... 38 0.008
CR542239-1|CAG47035.1| 119|Homo sapiens SNRPD1 protein. 38 0.008
BC072427-1|AAH72427.1| 119|Homo sapiens small nuclear ribonucle... 38 0.008
BC001721-1|AAH01721.1| 119|Homo sapiens small nuclear ribonucle... 38 0.008
BC016026-1|AAH16026.1| 80|Homo sapiens LSM6 homolog, U6 small ... 38 0.011
AJ238098-1|CAB45869.1| 80|Homo sapiens Lsm6 protein protein. 38 0.011
AF182292-1|AAD56230.1| 80|Homo sapiens U6 snRNA-associated Sm-... 38 0.011
AC097372-1|AAY41032.1| 80|Homo sapiens unknown protein. 38 0.011
X85372-1|CAA59688.1| 86|Homo sapiens Sm protein F protein. 34 0.10
CR456751-1|CAG33032.1| 86|Homo sapiens SNRPF protein. 34 0.10
BC128453-1|AAI28454.1| 86|Homo sapiens small nuclear ribonucle... 34 0.10
BC128452-1|AAI28453.1| 86|Homo sapiens small nuclear ribonucle... 34 0.10
BC063397-1|AAH63397.2| 86|Homo sapiens SNRPF protein protein. 34 0.10
BC002505-1|AAH02505.3| 86|Homo sapiens small nuclear ribonucle... 34 0.10
CR457185-1|CAG33466.1| 102|Homo sapiens LSM3 protein. 34 0.14
BC007055-1|AAH07055.1| 102|Homo sapiens LSM3 homolog, U6 small ... 34 0.14
AJ238095-1|CAB45866.1| 102|Homo sapiens Lsm3 protein protein. 34 0.14
AF182418-1|AAG14954.1| 102|Homo sapiens MDS017 protein. 34 0.14
AF182289-1|AAD56227.1| 102|Homo sapiens U6 snRNA-associated Sm-... 34 0.14
BC005938-1|AAH05938.1| 91|Homo sapiens LSM5 homolog, U6 small ... 29 2.9
AJ238097-1|CAB45868.1| 91|Homo sapiens Lsm5 protein protein. 29 2.9
AF182291-1|AAD56229.1| 91|Homo sapiens U6 snRNA-associated Sm-... 29 2.9
AK092212-1|BAC03830.1| 186|Homo sapiens protein ( Homo sapiens ... 28 9.0
AK091044-1|BAC03573.1| 264|Homo sapiens protein ( Homo sapiens ... 28 9.0
AB067495-1|BAB67801.1| 445|Homo sapiens KIAA1908 protein protein. 28 9.0
>CR542157-1|CAG46954.1| 95|Homo sapiens LSM2 protein.
Length = 95
Score = 162 bits (393), Expect = 3e-40
Identities = 78/88 (88%), Positives = 79/88 (89%)
Frame = -3
Query: 314 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNC 135
MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKL+DISV D EKYPHMLSVKNC
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 134 FIRGSVVRYVQLPADEGDTQLXPGCREK 51
FIRGSVVRYVQLPADE DTQL K
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDAARK 88
>CR542146-1|CAG46943.1| 95|Homo sapiens LSM2 protein.
Length = 95
Score = 162 bits (393), Expect = 3e-40
Identities = 78/88 (88%), Positives = 79/88 (89%)
Frame = -3
Query: 314 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNC 135
MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKL+DISV D EKYPHMLSVKNC
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 134 FIRGSVVRYVQLPADEGDTQLXPGCREK 51
FIRGSVVRYVQLPADE DTQL K
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDAARK 88
>BC009192-1|AAH09192.1| 95|Homo sapiens LSM2 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 95
Score = 162 bits (393), Expect = 3e-40
Identities = 78/88 (88%), Positives = 79/88 (89%)
Frame = -3
Query: 314 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNC 135
MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKL+DISV D EKYPHMLSVKNC
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 134 FIRGSVVRYVQLPADEGDTQLXPGCREK 51
FIRGSVVRYVQLPADE DTQL K
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDAARK 88
>BA000025-11|BAB63302.1| 95|Homo sapiens small nuclear ribonuclear
protein D homolog protein.
Length = 95
Score = 162 bits (393), Expect = 3e-40
Identities = 78/88 (88%), Positives = 79/88 (89%)
Frame = -3
Query: 314 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNC 135
MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKL+DISV D EKYPHMLSVKNC
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 134 FIRGSVVRYVQLPADEGDTQLXPGCREK 51
FIRGSVVRYVQLPADE DTQL K
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDAARK 88
>AL929592-3|CAI18462.1| 95|Homo sapiens LSM2 homolog, U6 small
nuclear RNA associated (S.ta 2 protein.
Length = 95
Score = 162 bits (393), Expect = 3e-40
Identities = 78/88 (88%), Positives = 79/88 (89%)
Frame = -3
Query: 314 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNC 135
MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKL+DISV D EKYPHMLSVKNC
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 134 FIRGSVVRYVQLPADEGDTQLXPGCREK 51
FIRGSVVRYVQLPADE DTQL K
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDAARK 88
>AL671762-3|CAI18212.1| 95|Homo sapiens LSM2 homolog, U6 small
nuclear RNA associated (S.ta 2 protein.
Length = 95
Score = 162 bits (393), Expect = 3e-40
Identities = 78/88 (88%), Positives = 79/88 (89%)
Frame = -3
Query: 314 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNC 135
MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKL+DISV D EKYPHMLSVKNC
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 134 FIRGSVVRYVQLPADEGDTQLXPGCREK 51
FIRGSVVRYVQLPADE DTQL K
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDAARK 88
>AL662834-14|CAI17733.1| 95|Homo sapiens LSM2 homolog, U6 small
nuclear RNA associated (S.pha 3 (pseudogene) protein.
Length = 95
Score = 162 bits (393), Expect = 3e-40
Identities = 78/88 (88%), Positives = 79/88 (89%)
Frame = -3
Query: 314 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNC 135
MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKL+DISV D EKYPHMLSVKNC
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 134 FIRGSVVRYVQLPADEGDTQLXPGCREK 51
FIRGSVVRYVQLPADE DTQL K
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDAARK 88
>AJ245416-1|CAB52190.1| 95|Homo sapiens G7b protein protein.
Length = 95
Score = 162 bits (393), Expect = 3e-40
Identities = 78/88 (88%), Positives = 79/88 (89%)
Frame = -3
Query: 314 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNC 135
MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKL+DISV D EKYPHMLSVKNC
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 134 FIRGSVVRYVQLPADEGDTQLXPGCREK 51
FIRGSVVRYVQLPADE DTQL K
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDAARK 88
>AF196468-1|AAG33023.1| 95|Homo sapiens SMX5-like protein protein.
Length = 95
Score = 162 bits (393), Expect = 3e-40
Identities = 78/88 (88%), Positives = 79/88 (89%)
Frame = -3
Query: 314 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNC 135
MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKL+DISV D EKYPHMLSVKNC
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 134 FIRGSVVRYVQLPADEGDTQLXPGCREK 51
FIRGSVVRYVQLPADE DTQL K
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDAARK 88
>AF182288-1|AAD56226.1| 95|Homo sapiens U6 snRNA-associated
Sm-like protein LSm2 protein.
Length = 95
Score = 162 bits (393), Expect = 3e-40
Identities = 78/88 (88%), Positives = 79/88 (89%)
Frame = -3
Query: 314 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNC 135
MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKL+DISV D EKYPHMLSVKNC
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 134 FIRGSVVRYVQLPADEGDTQLXPGCREK 51
FIRGSVVRYVQLPADE DTQL K
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDAARK 88
>AF136977-1|AAG49438.1| 95|Homo sapiens snRNP core SM-like protein
SM-x5 protein.
Length = 95
Score = 162 bits (393), Expect = 3e-40
Identities = 78/88 (88%), Positives = 79/88 (89%)
Frame = -3
Query: 314 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNC 135
MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKL+DISV D EKYPHMLSVKNC
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 134 FIRGSVVRYVQLPADEGDTQLXPGCREK 51
FIRGSVVRYVQLPADE DTQL K
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDAARK 88
>AF134726-9|AAD21818.1| 95|Homo sapiens snRNP protein.
Length = 95
Score = 162 bits (393), Expect = 3e-40
Identities = 78/88 (88%), Positives = 79/88 (89%)
Frame = -3
Query: 314 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNC 135
MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKL+DISV D EKYPHMLSVKNC
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 134 FIRGSVVRYVQLPADEGDTQLXPGCREK 51
FIRGSVVRYVQLPADE DTQL K
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDAARK 88
>BC023665-1|AAH23665.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 46.0 bits (104), Expect = 3e-05
Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Frame = -3
Query: 314 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNC 135
ML S K+ ++VELKN + G L S D ++NI L ++ + S + C
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREV-ICTSRDGDKFWRMPEC 59
Query: 134 FIRGSVVRYVQLP---ADEGDTQLXPGCREKGGDRCNKRELNR 15
+IRGS ++Y+++P D ++ R +GG + K++ R
Sbjct: 60 YIRGSTIKYLRIPDEIIDMVKEEVVAKGRGRGGLQQQKQQKGR 102
>BC022198-1|AAH22198.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 46.0 bits (104), Expect = 3e-05
Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Frame = -3
Query: 314 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNC 135
ML S K+ ++VELKN + G L S D ++NI L ++ + S + C
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREV-ICTSRDGDKFWRMPEC 59
Query: 134 FIRGSVVRYVQLP---ADEGDTQLXPGCREKGGDRCNKRELNR 15
+IRGS ++Y+++P D ++ R +GG + K++ R
Sbjct: 60 YIRGSTIKYLRIPDEIIDMVKEEVVAKGRGRGGLQQQKQQKGR 102
>BC003652-1|AAH03652.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 46.0 bits (104), Expect = 3e-05
Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Frame = -3
Query: 314 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNC 135
ML S K+ ++VELKN + G L S D ++NI L ++ + S + C
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREV-ICTSRDGDKFWRMPEC 59
Query: 134 FIRGSVVRYVQLP---ADEGDTQLXPGCREKGGDRCNKRELNR 15
+IRGS ++Y+++P D ++ R +GG + K++ R
Sbjct: 60 YIRGSTIKYLRIPDEIIDMVKEEVVAKGRGRGGLQQQKQQKGR 102
>BC000387-1|AAH00387.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 46.0 bits (104), Expect = 3e-05
Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Frame = -3
Query: 314 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNC 135
ML S K+ ++VELKN + G L S D ++NI L ++ + S + C
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREV-ICTSRDGDKFWRMPEC 59
Query: 134 FIRGSVVRYVQLP---ADEGDTQLXPGCREKGGDRCNKRELNR 15
+IRGS ++Y+++P D ++ R +GG + K++ R
Sbjct: 60 YIRGSTIKYLRIPDEIIDMVKEEVVAKGRGRGGLQQQKQQKGR 102
>AJ238096-1|CAB45867.1| 139|Homo sapiens Lsm4 protein protein.
Length = 139
Score = 46.0 bits (104), Expect = 3e-05
Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Frame = -3
Query: 314 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNC 135
ML S K+ ++VELKN + G L S D ++NI L ++ + S + C
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREV-ICTSRDGDKFWRMPEC 59
Query: 134 FIRGSVVRYVQLP---ADEGDTQLXPGCREKGGDRCNKRELNR 15
+IRGS ++Y+++P D ++ R +GG + K++ R
Sbjct: 60 YIRGSTIKYLRIPDEIIDMVKEEVVAKGRGRGGLQQQKQQKGR 102
>AF251218-1|AAF90055.1| 139|Homo sapiens LSm4 autoantigen protein.
Length = 139
Score = 46.0 bits (104), Expect = 3e-05
Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Frame = -3
Query: 314 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNC 135
ML S K+ ++VELKN + G L S D ++NI L ++ + S + C
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREV-ICTSRDGDKFWRMPEC 59
Query: 134 FIRGSVVRYVQLP---ADEGDTQLXPGCREKGGDRCNKRELNR 15
+IRGS ++Y+++P D ++ R +GG + K++ R
Sbjct: 60 YIRGSTIKYLRIPDEIIDMVKEEVVAKGRGRGGLQQQKQQKGR 102
>AF182290-1|AAD56228.1| 139|Homo sapiens U6 snRNA-associated
Sm-like protein LSm4 protein.
Length = 139
Score = 46.0 bits (104), Expect = 3e-05
Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Frame = -3
Query: 314 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNC 135
ML S K+ ++VELKN + G L S D ++NI L ++ + S + C
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREV-ICTSRDGDKFWRMPEC 59
Query: 134 FIRGSVVRYVQLP---ADEGDTQLXPGCREKGGDRCNKRELNR 15
+IRGS ++Y+++P D ++ R +GG + K++ R
Sbjct: 60 YIRGSTIKYLRIPDEIIDMVKEEVVAKGRGRGGLQQQKQQKGR 102
>AF117235-1|AAF17216.1| 139|Homo sapiens glycine-rich protein
protein.
Length = 139
Score = 46.0 bits (104), Expect = 3e-05
Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Frame = -3
Query: 314 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNC 135
ML S K+ ++VELKN + G L S D ++NI L ++ + S + C
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREV-ICTSRDGDKFWRMPEC 59
Query: 134 FIRGSVVRYVQLP---ADEGDTQLXPGCREKGGDRCNKRELNR 15
+IRGS ++Y+++P D ++ R +GG + K++ R
Sbjct: 60 YIRGSTIKYLRIPDEIIDMVKEEVVAKGRGRGGLQQQKQQKGR 102
>AJ577268-1|CAE11897.1| 119|Homo sapiens small nuclear
ribonucleoprotein Sm D1 protein.
Length = 119
Score = 39.1 bits (87), Expect = 0.004
Identities = 22/73 (30%), Positives = 36/73 (49%)
Frame = -3
Query: 314 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNC 135
M F L + V++ELKN + GT+ VD +N L + + + P + ++
Sbjct: 1 MKLVRFLMKLSHETVIIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREP--VQLETL 58
Query: 134 FIRGSVVRYVQLP 96
IRG+ +RY LP
Sbjct: 59 SIRGNNIRYFILP 71
>L36188-1|AAA85339.1| 119|Homo sapiens small nuclear
ribonucleoprotein protein.
Length = 119
Score = 37.9 bits (84), Expect = 0.008
Identities = 22/73 (30%), Positives = 35/73 (47%)
Frame = -3
Query: 314 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNC 135
M F L + V +ELKN + GT+ VD +N L + + + P + ++
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREP--VQLETL 58
Query: 134 FIRGSVVRYVQLP 96
IRG+ +RY LP
Sbjct: 59 SIRGNNIRYFILP 71
>J03798-1|AAA36620.1| 119|Homo sapiens protein ( Human autoantigen
small nuclear ribonucleoprotein Sm-D mRNA, complete cds.
).
Length = 119
Score = 37.9 bits (84), Expect = 0.008
Identities = 22/73 (30%), Positives = 35/73 (47%)
Frame = -3
Query: 314 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNC 135
M F L + V +ELKN + GT+ VD +N L + + + P + ++
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREP--VQLETL 58
Query: 134 FIRGSVVRYVQLP 96
IRG+ +RY LP
Sbjct: 59 SIRGNNIRYFILP 71
>CR542239-1|CAG47035.1| 119|Homo sapiens SNRPD1 protein.
Length = 119
Score = 37.9 bits (84), Expect = 0.008
Identities = 22/73 (30%), Positives = 35/73 (47%)
Frame = -3
Query: 314 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNC 135
M F L + V +ELKN + GT+ VD +N L + + + P + ++
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREP--VQLETL 58
Query: 134 FIRGSVVRYVQLP 96
IRG+ +RY LP
Sbjct: 59 SIRGNNIRYFILP 71
>BC072427-1|AAH72427.1| 119|Homo sapiens small nuclear
ribonucleoprotein D1 polypeptide 16kDa protein.
Length = 119
Score = 37.9 bits (84), Expect = 0.008
Identities = 22/73 (30%), Positives = 35/73 (47%)
Frame = -3
Query: 314 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNC 135
M F L + V +ELKN + GT+ VD +N L + + + P + ++
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREP--VQLETL 58
Query: 134 FIRGSVVRYVQLP 96
IRG+ +RY LP
Sbjct: 59 SIRGNNIRYFILP 71
>BC001721-1|AAH01721.1| 119|Homo sapiens small nuclear
ribonucleoprotein D1 polypeptide 16kDa protein.
Length = 119
Score = 37.9 bits (84), Expect = 0.008
Identities = 22/73 (30%), Positives = 35/73 (47%)
Frame = -3
Query: 314 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNC 135
M F L + V +ELKN + GT+ VD +N L + + + P + ++
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREP--VQLETL 58
Query: 134 FIRGSVVRYVQLP 96
IRG+ +RY LP
Sbjct: 59 SIRGNNIRYFILP 71
>BC016026-1|AAH16026.1| 80|Homo sapiens LSM6 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 80
Score = 37.5 bits (83), Expect = 0.011
Identities = 22/72 (30%), Positives = 36/72 (50%)
Frame = -3
Query: 320 RKMLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVK 141
RK F K ++G+ VVV+L + + G L +D Y+NI L + + +
Sbjct: 4 RKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYG-- 61
Query: 140 NCFIRGSVVRYV 105
+ FIRG+ V Y+
Sbjct: 62 DAFIRGNNVLYI 73
>AJ238098-1|CAB45869.1| 80|Homo sapiens Lsm6 protein protein.
Length = 80
Score = 37.5 bits (83), Expect = 0.011
Identities = 22/72 (30%), Positives = 36/72 (50%)
Frame = -3
Query: 320 RKMLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVK 141
RK F K ++G+ VVV+L + + G L +D Y+NI L + + +
Sbjct: 4 RKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYG-- 61
Query: 140 NCFIRGSVVRYV 105
+ FIRG+ V Y+
Sbjct: 62 DAFIRGNNVLYI 73
>AF182292-1|AAD56230.1| 80|Homo sapiens U6 snRNA-associated
Sm-like protein LSm6 protein.
Length = 80
Score = 37.5 bits (83), Expect = 0.011
Identities = 22/72 (30%), Positives = 36/72 (50%)
Frame = -3
Query: 320 RKMLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVK 141
RK F K ++G+ VVV+L + + G L +D Y+NI L + + +
Sbjct: 4 RKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYG-- 61
Query: 140 NCFIRGSVVRYV 105
+ FIRG+ V Y+
Sbjct: 62 DAFIRGNNVLYI 73
>AC097372-1|AAY41032.1| 80|Homo sapiens unknown protein.
Length = 80
Score = 37.5 bits (83), Expect = 0.011
Identities = 22/72 (30%), Positives = 36/72 (50%)
Frame = -3
Query: 320 RKMLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVK 141
RK F K ++G+ VVV+L + + G L +D Y+NI L + + +
Sbjct: 4 RKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYG-- 61
Query: 140 NCFIRGSVVRYV 105
+ FIRG+ V Y+
Sbjct: 62 DAFIRGNNVLYI 73
>X85372-1|CAA59688.1| 86|Homo sapiens Sm protein F protein.
Length = 86
Score = 34.3 bits (75), Expect = 0.10
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Frame = -3
Query: 299 FFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLSDI-SVIDSEKYPHMLSVKNCFIRG 123
F L GK V+V+LK + G L SVD Y+N++L++ ID H+ V IR
Sbjct: 10 FLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEV---LIRC 66
Query: 122 SVVRYVQ-LPADEGDTQL 72
+ V Y++ + +E D ++
Sbjct: 67 NNVLYIRGVEEEEEDGEM 84
>CR456751-1|CAG33032.1| 86|Homo sapiens SNRPF protein.
Length = 86
Score = 34.3 bits (75), Expect = 0.10
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Frame = -3
Query: 299 FFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLSDI-SVIDSEKYPHMLSVKNCFIRG 123
F L GK V+V+LK + G L SVD Y+N++L++ ID H+ V IR
Sbjct: 10 FLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEV---LIRC 66
Query: 122 SVVRYVQ-LPADEGDTQL 72
+ V Y++ + +E D ++
Sbjct: 67 NNVLYIRGVEEEEEDGEM 84
>BC128453-1|AAI28454.1| 86|Homo sapiens small nuclear
ribonucleoprotein polypeptide F protein.
Length = 86
Score = 34.3 bits (75), Expect = 0.10
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Frame = -3
Query: 299 FFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLSDI-SVIDSEKYPHMLSVKNCFIRG 123
F L GK V+V+LK + G L SVD Y+N++L++ ID H+ V IR
Sbjct: 10 FLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEV---LIRC 66
Query: 122 SVVRYVQ-LPADEGDTQL 72
+ V Y++ + +E D ++
Sbjct: 67 NNVLYIRGVEEEEEDGEM 84
>BC128452-1|AAI28453.1| 86|Homo sapiens small nuclear
ribonucleoprotein polypeptide F protein.
Length = 86
Score = 34.3 bits (75), Expect = 0.10
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Frame = -3
Query: 299 FFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLSDI-SVIDSEKYPHMLSVKNCFIRG 123
F L GK V+V+LK + G L SVD Y+N++L++ ID H+ V IR
Sbjct: 10 FLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEV---LIRC 66
Query: 122 SVVRYVQ-LPADEGDTQL 72
+ V Y++ + +E D ++
Sbjct: 67 NNVLYIRGVEEEEEDGEM 84
>BC063397-1|AAH63397.2| 86|Homo sapiens SNRPF protein protein.
Length = 86
Score = 34.3 bits (75), Expect = 0.10
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Frame = -3
Query: 299 FFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLSDI-SVIDSEKYPHMLSVKNCFIRG 123
F L GK V+V+LK + G L SVD Y+N++L++ ID H+ V IR
Sbjct: 10 FLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEV---LIRC 66
Query: 122 SVVRYVQ-LPADEGDTQL 72
+ V Y++ + +E D ++
Sbjct: 67 NNVLYIRGVEEEEEDGEM 84
>BC002505-1|AAH02505.3| 86|Homo sapiens small nuclear
ribonucleoprotein polypeptide F protein.
Length = 86
Score = 34.3 bits (75), Expect = 0.10
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Frame = -3
Query: 299 FFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLSDI-SVIDSEKYPHMLSVKNCFIRG 123
F L GK V+V+LK + G L SVD Y+N++L++ ID H+ V IR
Sbjct: 10 FLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEV---LIRC 66
Query: 122 SVVRYVQ-LPADEGDTQL 72
+ V Y++ + +E D ++
Sbjct: 67 NNVLYIRGVEEEEEDGEM 84
>CR457185-1|CAG33466.1| 102|Homo sapiens LSM3 protein.
Length = 102
Score = 33.9 bits (74), Expect = 0.14
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 11/74 (14%)
Frame = -3
Query: 272 VVVELKNDLSICGTLHSVDQYLNIKLSDIS------VIDSEKYPHML-----SVKNCFIR 126
+ V+++ND + G LH+ DQ+LN+ L D+ ID E Y + ++ F+R
Sbjct: 29 IYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVR 88
Query: 125 GSVVRYVQLPADEG 84
G V V P G
Sbjct: 89 GDGVVLVAPPLRVG 102
>BC007055-1|AAH07055.1| 102|Homo sapiens LSM3 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 102
Score = 33.9 bits (74), Expect = 0.14
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 11/74 (14%)
Frame = -3
Query: 272 VVVELKNDLSICGTLHSVDQYLNIKLSDIS------VIDSEKYPHML-----SVKNCFIR 126
+ V+++ND + G LH+ DQ+LN+ L D+ ID E Y + ++ F+R
Sbjct: 29 IYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVR 88
Query: 125 GSVVRYVQLPADEG 84
G V V P G
Sbjct: 89 GDGVVLVAPPLRVG 102
>AJ238095-1|CAB45866.1| 102|Homo sapiens Lsm3 protein protein.
Length = 102
Score = 33.9 bits (74), Expect = 0.14
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 11/74 (14%)
Frame = -3
Query: 272 VVVELKNDLSICGTLHSVDQYLNIKLSDIS------VIDSEKYPHML-----SVKNCFIR 126
+ V+++ND + G LH+ DQ+LN+ L D+ ID E Y + ++ F+R
Sbjct: 29 IYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVR 88
Query: 125 GSVVRYVQLPADEG 84
G V V P G
Sbjct: 89 GDGVVLVAPPLRVG 102
>AF182418-1|AAG14954.1| 102|Homo sapiens MDS017 protein.
Length = 102
Score = 33.9 bits (74), Expect = 0.14
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 11/74 (14%)
Frame = -3
Query: 272 VVVELKNDLSICGTLHSVDQYLNIKLSDIS------VIDSEKYPHML-----SVKNCFIR 126
+ V+++ND + G LH+ DQ+LN+ L D+ ID E Y + ++ F+R
Sbjct: 29 IYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVR 88
Query: 125 GSVVRYVQLPADEG 84
G V V P G
Sbjct: 89 GDGVVLVAPPLRVG 102
>AF182289-1|AAD56227.1| 102|Homo sapiens U6 snRNA-associated
Sm-like protein LSm3 protein.
Length = 102
Score = 33.9 bits (74), Expect = 0.14
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 11/74 (14%)
Frame = -3
Query: 272 VVVELKNDLSICGTLHSVDQYLNIKLSDIS------VIDSEKYPHML-----SVKNCFIR 126
+ V+++ND + G LH+ DQ+LN+ L D+ ID E Y + ++ F+R
Sbjct: 29 IYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVR 88
Query: 125 GSVVRYVQLPADEG 84
G V V P G
Sbjct: 89 GDGVVLVAPPLRVG 102
>BC005938-1|AAH05938.1| 91|Homo sapiens LSM5 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 91
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -3
Query: 284 VGKDVVVELKNDLSICGTLHSVDQYLNIKLSDIS 183
+G + + +K+D I GTL D ++N+ L D++
Sbjct: 22 IGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVT 55
>AJ238097-1|CAB45868.1| 91|Homo sapiens Lsm5 protein protein.
Length = 91
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -3
Query: 284 VGKDVVVELKNDLSICGTLHSVDQYLNIKLSDIS 183
+G + + +K+D I GTL D ++N+ L D++
Sbjct: 22 IGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVT 55
>AF182291-1|AAD56229.1| 91|Homo sapiens U6 snRNA-associated
Sm-like protein LSm5 protein.
Length = 91
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -3
Query: 284 VGKDVVVELKNDLSICGTLHSVDQYLNIKLSDIS 183
+G + + +K+D I GTL D ++N+ L D++
Sbjct: 22 IGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVT 55
>AK092212-1|BAC03830.1| 186|Homo sapiens protein ( Homo sapiens
cDNA FLJ34893 fis, clone NT2NE2017721. ).
Length = 186
Score = 27.9 bits (59), Expect = 9.0
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +1
Query: 37 QRSPPFSRHPGXSWVSPSSAGSCTYRTTEPLIKQFFTDNI*GYFSESITLISES 198
+RSP RHP S+ SS S + R T P ++ + + G S TL S S
Sbjct: 65 RRSPGRRRHPHSSFPQASSPSSPSRRETIPQVQ---SSGVPGAMSPEQTLFSRS 115
>AK091044-1|BAC03573.1| 264|Homo sapiens protein ( Homo sapiens
cDNA FLJ33725 fis, clone BRAWH2017379. ).
Length = 264
Score = 27.9 bits (59), Expect = 9.0
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +1
Query: 37 QRSPPFSRHPGXSWVSPSSAGSCTYRTTEPLIKQFFTDNI*GYFSESITLISES 198
+RSP RHP S+ SS S + R T P ++ + + G S TL S S
Sbjct: 143 RRSPGRRRHPHSSFPQASSPSSPSRRETIPQVQ---SSGVPGAMSPEQTLFSRS 193
>AB067495-1|BAB67801.1| 445|Homo sapiens KIAA1908 protein protein.
Length = 445
Score = 27.9 bits (59), Expect = 9.0
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +1
Query: 37 QRSPPFSRHPGXSWVSPSSAGSCTYRTTEPLIKQFFTDNI*GYFSESITLISES 198
+RSP RHP S+ SS S + R T P ++ + + G S TL S S
Sbjct: 233 RRSPGRRRHPHSSFPQASSPSSPSRRETIPQVQ---SSGVPGAMSPEQTLFSRS 283
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,934,964
Number of Sequences: 237096
Number of extensions: 808246
Number of successful extensions: 1819
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 1785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1811
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1968306988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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