Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_D12
         (346 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81118-7|CAB03328.3|   97|Caenorhabditis elegans Hypothetical pr...   152   7e-38
U20864-9|AAC46661.1|  123|Caenorhabditis elegans Lsm sm-like pro...    43   7e-05
U28738-8|AAA68313.1|  126|Caenorhabditis elegans Small nuclear r...    42   2e-04
AC025726-13|AAK73913.1|   77|Caenorhabditis elegans Lsm sm-like ...    38   0.002
Z81097-16|CAE17865.1|  122|Caenorhabditis elegans Hypothetical p...    36   0.006
Z81071-3|CAB03013.1|   91|Caenorhabditis elegans Hypothetical pr...    33   0.042
AL132865-8|CAB60606.2|  102|Caenorhabditis elegans Hypothetical ...    30   0.39 
AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical...    27   4.8  
Z71264-3|CAA95827.1|  325|Caenorhabditis elegans Hypothetical pr...    26   6.3  
U41264-7|AAA82427.2|  819|Caenorhabditis elegans Hypothetical pr...    26   8.3  
U41009-1|AAA82278.3|  501|Caenorhabditis elegans Hypothetical pr...    26   8.3  

>Z81118-7|CAB03328.3|   97|Caenorhabditis elegans Hypothetical
           protein T10G3.6 protein.
          Length = 97

 Score =  152 bits (368), Expect = 7e-38
 Identities = 71/89 (79%), Positives = 82/89 (92%), Gaps = 1/89 (1%)
 Frame = -3

Query: 314 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNC 135
           MLF+SFFKSLVGKDVVVELKNDLSICGTLHSVDQYLN+KL+DI+V D E++PHM+SVKNC
Sbjct: 1   MLFFSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNMKLTDITVSDPERFPHMVSVKNC 60

Query: 134 FIRGSVVRYVQLPADEGDTQ-LXPGCREK 51
           FIRGSVVRYVQLP+D+ DTQ L   CR++
Sbjct: 61  FIRGSVVRYVQLPSDQVDTQLLADSCRKE 89


>U20864-9|AAC46661.1|  123|Caenorhabditis elegans Lsm sm-like
           protein protein 4 protein.
          Length = 123

 Score = 42.7 bits (96), Expect = 7e-05
 Identities = 20/69 (28%), Positives = 38/69 (55%)
 Frame = -3

Query: 302 SFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNCFIRG 123
           S  K+     ++VELKN  +  G L + D ++NI L D+ +  S+       +   ++RG
Sbjct: 6   SLLKTAQNHPMLVELKNGETYNGHLKACDSWMNIHLVDV-IFTSKDGDKFFKMSEAYVRG 64

Query: 122 SVVRYVQLP 96
           S ++Y+++P
Sbjct: 65  STIKYLRIP 73


>U28738-8|AAA68313.1|  126|Caenorhabditis elegans Small nuclear
           ribonucleoproteinprotein 3 protein.
          Length = 126

 Score = 41.5 bits (93), Expect = 2e-04
 Identities = 25/73 (34%), Positives = 36/73 (49%)
 Frame = -3

Query: 314 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNC 135
           M    F   L  + V +ELKN   + GT+  VD  +N  L  +S+    K P  L   + 
Sbjct: 1   MKLVRFLMKLSHETVNIELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKEPVKLDTLS- 59

Query: 134 FIRGSVVRYVQLP 96
            IRG+ +RY+ LP
Sbjct: 60  -IRGNNIRYIILP 71


>AC025726-13|AAK73913.1|   77|Caenorhabditis elegans Lsm sm-like
           protein protein 6 protein.
          Length = 77

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 21/65 (32%), Positives = 34/65 (52%)
 Frame = -3

Query: 299 FFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNCFIRGS 120
           F K ++GK VVV+L + +   G L  +D Y+NI L       + +  +     + FIRG+
Sbjct: 10  FLKKVIGKPVVVKLNSGVDYRGILACLDGYMNIALEQTEEYSNGQLQNKYG--DAFIRGN 67

Query: 119 VVRYV 105
            V Y+
Sbjct: 68  NVLYI 72


>Z81097-16|CAE17865.1|  122|Caenorhabditis elegans Hypothetical
           protein K07A1.15 protein.
          Length = 122

 Score = 36.3 bits (80), Expect = 0.006
 Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
 Frame = -3

Query: 293 KSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLSDISVI-DSEK 165
           + + GK V VEL+ND+ + G L S D  L+I++   ++I D++K
Sbjct: 19  QGMAGKKVFVELRNDVYVIGILESCDSNLDIRIQYATIIRDAQK 62


>Z81071-3|CAB03013.1|   91|Caenorhabditis elegans Hypothetical
           protein F28F8.3 protein.
          Length = 91

 Score = 33.5 bits (73), Expect = 0.042
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 284 VGKDVVVELKNDLSICGTLHSVDQYLNIKLSDI 186
           +G  + V +KND  I GTL   D Y+N+ L D+
Sbjct: 22  IGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDV 54


>AL132865-8|CAB60606.2|  102|Caenorhabditis elegans Hypothetical
           protein Y62E10A.12 protein.
          Length = 102

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = -3

Query: 272 VVVELKNDLSICGTLHSVDQYLNIKLSDI 186
           V V+++ND  + G L + DQ+LN+ LS++
Sbjct: 29  VYVKMRNDRELRGRLRAFDQHLNMVLSEV 57


>AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical
            protein Y66D12A.14 protein.
          Length = 2870

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +2

Query: 77   GCLPHQPAVVRIEPRSLL*NNFSLITYE--DTFQSQSRLY 190
            GCLP+   V  ++ R L   NF L+  E  DT    ++LY
Sbjct: 2670 GCLPYHKMVEELKKRFLGKTNFILLDEEFGDTVDEVAKLY 2709


>Z71264-3|CAA95827.1|  325|Caenorhabditis elegans Hypothetical
           protein K07G5.4 protein.
          Length = 325

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +2

Query: 86  PHQPAVVRIE--PRSLL*NNFSLITYEDTFQSQSRLYPKALY*DIDPQ 223
           P +P++ R E  PRS+L N+ S   YE+ +     L P  +  DI PQ
Sbjct: 230 PPRPSITRTESVPRSILKNSSSFAIYEEIY--GDHLTPPPI--DIRPQ 273


>U41264-7|AAA82427.2|  819|Caenorhabditis elegans Hypothetical
           protein F10E7.4 protein.
          Length = 819

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 104 QLPADEGDTQLXPGCREKGGDRCN 33
           Q+    GD ++ PGCR+ G    N
Sbjct: 104 QVVKGHGDARISPGCRQSGVSHAN 127


>U41009-1|AAA82278.3|  501|Caenorhabditis elegans Hypothetical
           protein C06E7.2 protein.
          Length = 501

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +1

Query: 43  SPPFSRHPGXSWVSPSSAGSCTYRTTEPLIKQFFTDNI*GYFSESITLISESFIL 207
           +P  ++ P  S V+PSSA S   +      K FF+  + G  + S + I+E  ++
Sbjct: 346 TPSPTKKPSESSVTPSSATSFKPKEAYSPSKSFFSYEMGGVGTTSASEINEKILI 400


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,448,220
Number of Sequences: 27780
Number of extensions: 137165
Number of successful extensions: 363
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)