Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_D08
(534 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62263 Cluster: 40S ribosomal protein S14; n=231; cellu... 204 7e-52
UniRef50_Q01E13 Cluster: 40S ribosomal protein S14; n=1; Ostreoc... 136 3e-31
UniRef50_Q4Q6S9 Cluster: 40S ribosomal protein S14; n=1; Leishma... 135 7e-31
UniRef50_P54021 Cluster: 30S ribosomal protein S11P; n=15; Archa... 118 1e-25
UniRef50_Q58NR0 Cluster: Ribosomal protein S14; n=6; Eukaryota|R... 115 8e-25
UniRef50_A0RWI9 Cluster: 30S ribosomal protein S11P; n=2; Thermo... 114 1e-24
UniRef50_Q3LWB9 Cluster: Ribosomal protein S14; n=1; Bigelowiell... 110 2e-23
UniRef50_A0SNY7 Cluster: 30S ribosomal protein S11; n=1; uncultu... 107 2e-22
UniRef50_A7QYG3 Cluster: Chromosome chr17 scaffold_246, whole ge... 72 7e-12
UniRef50_A5BMD1 Cluster: Putative uncharacterized protein; n=1; ... 64 1e-09
UniRef50_A4D1M5 Cluster: Similar to ribosomal protein S14; n=3; ... 61 2e-08
UniRef50_A3A282 Cluster: Putative uncharacterized protein; n=3; ... 56 4e-07
UniRef50_UPI0000DBF82A Cluster: UPI0000DBF82A related cluster; n... 56 5e-07
UniRef50_Q5LW33 Cluster: 30S ribosomal protein S11; n=15; Bacter... 56 5e-07
UniRef50_P59378 Cluster: 30S ribosomal protein S11; n=48; Bacter... 56 7e-07
UniRef50_A6PT07 Cluster: Ribosomal protein S11; n=1; Victivallis... 54 2e-06
UniRef50_A6YE90 Cluster: Ribosomal protein S11; n=5; cellular or... 53 4e-06
UniRef50_P59375 Cluster: 30S ribosomal protein S11; n=85; cellul... 50 3e-05
UniRef50_Q12G79 Cluster: 30S ribosomal protein S11; n=186; cellu... 50 4e-05
UniRef50_Q1IS96 Cluster: 30S ribosomal protein S11; n=274; cellu... 50 4e-05
UniRef50_P04969 Cluster: 30S ribosomal protein S11; n=155; cellu... 48 1e-04
UniRef50_O59305 Cluster: Putative uncharacterized protein PH1639... 46 5e-04
UniRef50_Q2GEB7 Cluster: 30S ribosomal protein S11; n=1; Neorick... 45 0.001
UniRef50_P56802 Cluster: Chloroplast 30S ribosomal protein S11; ... 44 0.002
UniRef50_Q98Q07 Cluster: 30S ribosomal protein S11; n=33; Bacter... 42 0.007
UniRef50_A0NHE9 Cluster: Ribosomal protein S11; n=1; Oenococcus ... 42 0.009
UniRef50_Q4S8D4 Cluster: Chromosome undetermined SCAF14706, whol... 41 0.020
UniRef50_Q6ASY6 Cluster: Small subunit ribosomal protein, putati... 40 0.027
UniRef50_Q0P3I7 Cluster: Rps11; n=1; Ostreococcus tauri|Rep: Rps... 40 0.027
UniRef50_P46746 Cluster: Mitochondrial ribosomal protein S11; n=... 39 0.083
UniRef50_Q7YDI4 Cluster: Small subunit ribosomal protein; n=29; ... 38 0.11
UniRef50_Q9PQN5 Cluster: 30S ribosomal protein S11; n=1; Ureapla... 38 0.11
UniRef50_Q9C6S3 Cluster: 30S ribosomal protein S11, putative; n=... 36 0.58
UniRef50_UPI0000586F02 Cluster: PREDICTED: hypothetical protein ... 36 0.77
UniRef50_P30059 Cluster: Plastid 30S ribosomal protein S11; n=4;... 36 0.77
UniRef50_Q9TLV1 Cluster: Chloroplast 30S ribosomal protein S11; ... 34 2.3
UniRef50_Q8W9P7 Cluster: Ribosomal protein S11; n=1; Mesostigma ... 33 4.1
UniRef50_Q49081 Cluster: 30S ribosomal protein; n=1; Mycoplasma ... 32 7.2
UniRef50_Q0CSH9 Cluster: Predicted protein; n=1; Aspergillus ter... 32 9.5
UniRef50_P25370 Cluster: Good for full DBP5 activity protein 2; ... 32 9.5
>UniRef50_P62263 Cluster: 40S ribosomal protein S14; n=231; cellular
organisms|Rep: 40S ribosomal protein S14 - Homo sapiens
(Human)
Length = 151
Score = 204 bits (499), Expect = 7e-52
Identities = 103/140 (73%), Positives = 110/140 (78%)
Frame = -3
Query: 484 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 305
MAPRK K KEE ++LGPQ GE VFGV HIFASFNDTFVHVTDLSG+ETI RVTGGM
Sbjct: 1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 60
Query: 304 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXGAQXALRAIA 125
KVKADRDE+SPYAAMLAAQDVA++CK LGITALHIKLRA GAQ ALRA+A
Sbjct: 61 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 120
Query: 124 RXSMKIGRIEDGTPGPXDXT 65
R MKIGRIED TP P D T
Sbjct: 121 RSGMKIGRIEDVTPIPSDST 140
>UniRef50_Q01E13 Cluster: 40S ribosomal protein S14; n=1;
Ostreococcus tauri|Rep: 40S ribosomal protein S14 -
Ostreococcus tauri
Length = 243
Score = 136 bits (329), Expect = 3e-31
Identities = 67/98 (68%), Positives = 76/98 (77%)
Frame = -3
Query: 358 HVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXX 179
HVTDLSG+ET++R TGGMKVKADRDE+SPYAAMLAAQDVA +CK LGITALHIK+RA
Sbjct: 90 HVTDLSGKETLSRCTGGMKVKADRDESSPYAAMLAAQDVAARCKELGITALHIKMRAKGG 149
Query: 178 XXXXXXXXGAQXALRAIARXSMKIGRIEDGTPGPXDXT 65
G Q ALRA++R +KIGRIED TP P D T
Sbjct: 150 NKTKSPGPGGQSALRALSRSGIKIGRIEDVTPTPTDST 187
Score = 48.8 bits (111), Expect = 8e-05
Identities = 25/40 (62%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Frame = -3
Query: 475 RKNKVAKEEVQVT-LGPQHLVGETVFGVAHIFASFNDTFV 359
R V+ V T +GPQ GE VFGVAHIFASFNDTFV
Sbjct: 5 RHRSVSVRRVMATYVGPQAREGELVFGVAHIFASFNDTFV 44
>UniRef50_Q4Q6S9 Cluster: 40S ribosomal protein S14; n=1; Leishmania
major|Rep: 40S ribosomal protein S14 - Leishmania major
Length = 203
Score = 135 bits (326), Expect = 7e-31
Identities = 63/90 (70%), Positives = 74/90 (82%)
Frame = -3
Query: 457 KEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEA 278
K+EV+ GP G+ V+GV HIFASFNDTFVHVTD+SGRET +VTGGMKVKADRDE+
Sbjct: 13 KQEVKA-YGPNVKKGDLVYGVVHIFASFNDTFVHVTDMSGRETYVKVTGGMKVKADRDES 71
Query: 277 SPYAAMLAAQDVAEKCKTLGITALHIKLRA 188
SPYAAM+AAQDV +CK GI ALH+K+RA
Sbjct: 72 SPYAAMMAAQDVVARCKECGINALHVKMRA 101
>UniRef50_P54021 Cluster: 30S ribosomal protein S11P; n=15;
Archaea|Rep: 30S ribosomal protein S11P - Methanococcus
jannaschii
Length = 129
Score = 118 bits (283), Expect = 1e-25
Identities = 58/113 (51%), Positives = 76/113 (67%)
Frame = -3
Query: 403 FGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKT 224
+G+ HI++S+N+T +H TD++G ETIARV+GG + RDE SPYAAM AA +AE K
Sbjct: 9 WGIVHIYSSYNNTIIHATDITGAETIARVSGGRVTRNQRDEGSPYAAMQAAFKLAEVLKE 68
Query: 223 LGITALHIKLRAXXXXXXXXXXXGAQXALRAIARXSMKIGRIEDGTPGPXDXT 65
GI +HIK+RA GAQ A+RA+AR ++IGRIED TP P D T
Sbjct: 69 RGIENIHIKVRAPGGSGQKNPGPGAQAAIRALARAGLRIGRIEDVTPVPHDGT 121
>UniRef50_Q58NR0 Cluster: Ribosomal protein S14; n=6; Eukaryota|Rep:
Ribosomal protein S14 - Palaemonetes pugio
Length = 77
Score = 115 bits (276), Expect = 8e-25
Identities = 55/70 (78%), Positives = 58/70 (82%)
Frame = -3
Query: 484 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 305
MAPRK K KEEVQV LGPQ GE VF V HI+AS+NDTFVHVTDLSGRETI RVTGG
Sbjct: 1 MAPRKGKTPKEEVQVQLGPQVREGENVFAVCHIYASYNDTFVHVTDLSGRETIIRVTGGQ 60
Query: 304 KVKADRDEAS 275
KVKADRDE+S
Sbjct: 61 KVKADRDESS 70
>UniRef50_A0RWI9 Cluster: 30S ribosomal protein S11P; n=2;
Thermoprotei|Rep: 30S ribosomal protein S11P -
Cenarchaeum symbiosum
Length = 198
Score = 114 bits (275), Expect = 1e-24
Identities = 55/122 (45%), Positives = 78/122 (63%)
Frame = -3
Query: 430 PQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAA 251
P+ + G+AHI++S+N+T +H+TDL+G ET++ +GG+ V ADR E+SP+AAM AA
Sbjct: 66 PETTPADEKLGIAHIYSSYNNTIIHMTDLTGAETVSISSGGVHVNADRYESSPFAAMKAA 125
Query: 250 QDVAEKCKTLGITALHIKLRAXXXXXXXXXXXGAQXALRAIARXSMKIGRIEDGTPGPXD 71
V E + G T HI++RA GAQ A+RA+AR +IGRI+D TP P D
Sbjct: 126 NKVIESARAKGFTGFHIRVRAVGGVGSRVPGPGAQAAIRALARGGFRIGRIDDVTPIPHD 185
Query: 70 XT 65
T
Sbjct: 186 TT 187
>UniRef50_Q3LWB9 Cluster: Ribosomal protein S14; n=1; Bigelowiella
natans|Rep: Ribosomal protein S14 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 145
Score = 110 bits (264), Expect = 2e-23
Identities = 52/114 (45%), Positives = 70/114 (61%)
Frame = -3
Query: 406 VFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCK 227
+FG+ HI ++ NDT +HVTD++G ETI+R++ G+ +D+ S Y AMLA Q V+ CK
Sbjct: 11 LFGILHILSTKNDTIIHVTDITGSETISRISSGIVATNGKDKKSNYCAMLATQKVSNVCK 70
Query: 226 TLGITALHIKLRAXXXXXXXXXXXGAQXALRAIARXSMKIGRIEDGTPGPXDXT 65
LGI ALHIK+RA GA + + R KIGRIED TP P + T
Sbjct: 71 VLGINALHIKIRARGGNASHLISTGAHTVVTTLVRLGFKIGRIEDTTPTPTNGT 124
>UniRef50_A0SNY7 Cluster: 30S ribosomal protein S11; n=1; uncultured
euryarchaeote ARMAN-2|Rep: 30S ribosomal protein S11 -
uncultured euryarchaeote ARMAN-2
Length = 169
Score = 107 bits (256), Expect = 2e-22
Identities = 55/113 (48%), Positives = 72/113 (63%)
Frame = -3
Query: 403 FGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKT 224
+ VAH+++S NDT + +TDLSG ETIA +GGM V AD E SPYAAM AA VA + K
Sbjct: 46 WAVAHVYSSKNDTIITLTDLSGSETIAVGSGGMMVNADSQEGSPYAAMQAAYKVAAEAKE 105
Query: 223 LGITALHIKLRAXXXXXXXXXXXGAQXALRAIARXSMKIGRIEDGTPGPXDXT 65
GIT ++I++RA GAQ +R +AR +++ RIED TP P D T
Sbjct: 106 KGITNINIEIRAPGGHGSKTPGHGAQAVVRVLARSGLRVNRIEDVTPIPTDTT 158
>UniRef50_A7QYG3 Cluster: Chromosome chr17 scaffold_246, whole
genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr17 scaffold_246, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 182
Score = 72.1 bits (169), Expect = 7e-12
Identities = 37/68 (54%), Positives = 45/68 (66%)
Frame = -3
Query: 334 ETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXX 155
ET+ R TGGMK K D +E+SP AAM AAQDV+++CK L IT LH+KL A
Sbjct: 50 ETLVRTTGGMKEKTDGEESSPCAAMPAAQDVSQECKELDITVLHVKLHAARGNKTKTPGP 109
Query: 154 GAQXALRA 131
GAQ AL+A
Sbjct: 110 GAQSALQA 117
>UniRef50_A5BMD1 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 104
Score = 64.5 bits (150), Expect = 1e-09
Identities = 31/49 (63%), Positives = 38/49 (77%)
Frame = -3
Query: 334 ETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRA 188
ET+ R TGGMK KAD +E+SP AAM AAQDV+++ K L IT LH+KL A
Sbjct: 29 ETLVRSTGGMKEKADGEESSPCAAMPAAQDVSQRFKELDITVLHVKLHA 77
>UniRef50_A4D1M5 Cluster: Similar to ribosomal protein S14; n=3;
Homo/Pan/Gorilla group|Rep: Similar to ribosomal protein
S14 - Homo sapiens (Human)
Length = 350
Score = 60.9 bits (141), Expect = 2e-08
Identities = 32/61 (52%), Positives = 39/61 (63%)
Frame = -3
Query: 307 MKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXGAQXALRAI 128
MK +AD+DE+SP AML AQDV ++CK LGITALHIKL A G + RA+
Sbjct: 1 MKEQADQDESSPCTAMLTAQDVVQRCKELGITALHIKLLATGGNRTKTPGPGVRLVPRAL 60
Query: 127 A 125
A
Sbjct: 61 A 61
>UniRef50_A3A282 Cluster: Putative uncharacterized protein; n=3;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. japonica (Rice)
Length = 332
Score = 56.4 bits (130), Expect = 4e-07
Identities = 42/85 (49%), Positives = 46/85 (54%), Gaps = 11/85 (12%)
Frame = -3
Query: 319 VTGGMKVKADRDEASPYAAMLAAQDVAEKCK------TLGITALH---IKLRAXXXXXXX 167
V GGMK+KAD DE+SPYAAML +QDVA CK LG L I L A
Sbjct: 211 VGGGMKIKADCDESSPYAAMLVSQDVALCCKYRTNGQILGDCFLEFCLIMLCAAGGNKTN 270
Query: 166 XXXXGAQXALR--AIARXSMKIGRI 98
AQ ALR A+AR M IGRI
Sbjct: 271 TPGPDAQSALRALALARSGMNIGRI 295
>UniRef50_UPI0000DBF82A Cluster: UPI0000DBF82A related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DBF82A UniRef100 entry -
Rattus norvegicus
Length = 119
Score = 56.0 bits (129), Expect = 5e-07
Identities = 40/117 (34%), Positives = 60/117 (51%), Gaps = 2/117 (1%)
Frame = -3
Query: 442 VTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGR-ETIARVTGGMKVKADRDEASPYA 266
++L PQ + G+ V GV +IFASF D+F++ TD+ G+ T VT MK + E +P
Sbjct: 5 LSLRPQVVEGQNVLGVCYIFASFGDSFIYGTDVYGKVNTCQYVTSRMKTQ--YAETNPCH 62
Query: 265 AMLA-AQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXGAQXALRAIARXSMKIGRI 98
+ A DV + K + + ALHI+L+ LRA+A K GR+
Sbjct: 63 RLHAGCLDVTHRFKEMSVPALHIRLQ-DTEGTWLKLLDLEYSVLRALACGVNKRGRL 118
>UniRef50_Q5LW33 Cluster: 30S ribosomal protein S11; n=15;
Bacteria|Rep: 30S ribosomal protein S11 - Silicibacter
pomeroyi
Length = 130
Score = 56.0 bits (129), Expect = 5e-07
Identities = 35/106 (33%), Positives = 55/106 (51%)
Frame = -3
Query: 400 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 221
GVAH+ ++FN+T + ++D+ G G M K R +++PYAA LAA+D K +
Sbjct: 20 GVAHVNSTFNNTKILISDVQGNAISWSSAGTMGFKGSR-KSTPYAAQLAAEDAGRKAQDH 78
Query: 220 GITALHIKLRAXXXXXXXXXXXGAQXALRAIARXSMKIGRIEDGTP 83
G+ L ++++ G + ALRA+A I I D TP
Sbjct: 79 GVKTLEVEVQG--------PGSGRESALRALAAVGFNITSIRDVTP 116
>UniRef50_P59378 Cluster: 30S ribosomal protein S11; n=48;
Bacteria|Rep: 30S ribosomal protein S11 - Streptococcus
mutans
Length = 127
Score = 55.6 bits (128), Expect = 7e-07
Identities = 32/108 (29%), Positives = 57/108 (52%)
Frame = -3
Query: 400 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 221
G+AHI A+FN+T V +TD+ G G + K R +++P+AA +AA+ A+ +
Sbjct: 17 GIAHIHATFNNTIVMITDVHGNALAWSSAGALGFKGSR-KSTPFAAQMAAEAAAKSAQEH 75
Query: 220 GITALHIKLRAXXXXXXXXXXXGAQXALRAIARXSMKIGRIEDGTPGP 77
G+ + + ++ G + A+RA+A +++ I D TP P
Sbjct: 76 GLKTVEVTVKG--------PGSGRESAIRALAAAGLEVTSIRDVTPVP 115
>UniRef50_A6PT07 Cluster: Ribosomal protein S11; n=1; Victivallis
vadensis ATCC BAA-548|Rep: Ribosomal protein S11 -
Victivallis vadensis ATCC BAA-548
Length = 148
Score = 54.0 bits (124), Expect = 2e-06
Identities = 35/108 (32%), Positives = 57/108 (52%)
Frame = -3
Query: 400 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 221
G+A++ A+FN+T V TDL G I TGG +++ YAA + A D A+K + +
Sbjct: 38 GIAYVLATFNNTKVTFTDLHG-NVICWSTGGKNGFKGSRKSTAYAAQVIAGDAAKKAQLV 96
Query: 220 GITALHIKLRAXXXXXXXXXXXGAQXALRAIARXSMKIGRIEDGTPGP 77
G+ + ++++ G + A+R IA M+I I+D TP P
Sbjct: 97 GMKEVEVRIKG--------PGAGRESAVRGIAAAGMEISTIKDITPVP 136
>UniRef50_A6YE90 Cluster: Ribosomal protein S11; n=5; cellular
organisms|Rep: Ribosomal protein S11 - Chlorokybus
atmophyticus (Soil alga)
Length = 262
Score = 53.2 bits (122), Expect = 4e-06
Identities = 37/108 (34%), Positives = 54/108 (50%)
Frame = -3
Query: 400 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 221
GVAHI + N+T + +TDL G +G + K R + S YAA AA+ A+K L
Sbjct: 152 GVAHIQTTLNNTIITITDLDGNTKSWSSSGSIGFKGSRRKTS-YAAQAAAETAAKKSIQL 210
Query: 220 GITALHIKLRAXXXXXXXXXXXGAQXALRAIARXSMKIGRIEDGTPGP 77
GI + +K+R G +LR + +KI +I+D TP P
Sbjct: 211 GIKDVTVKIRG--------FGPGRDSSLRGLQIGGLKIYKIQDTTPLP 250
>UniRef50_P59375 Cluster: 30S ribosomal protein S11; n=85; cellular
organisms|Rep: 30S ribosomal protein S11 - Shewanella
oneidensis
Length = 130
Score = 50.0 bits (114), Expect = 3e-05
Identities = 34/108 (31%), Positives = 53/108 (49%)
Frame = -3
Query: 400 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 221
G+AHI ASFN+T V +TD G +GG + R +++P+AA +AA+ +
Sbjct: 20 GMAHIHASFNNTIVTITDRQGNALSWATSGGSGFRGSR-KSTPFAAQVAAERAGAAAQDY 78
Query: 220 GITALHIKLRAXXXXXXXXXXXGAQXALRAIARXSMKIGRIEDGTPGP 77
G+ L + ++ G + A+RA+ KI I D TP P
Sbjct: 79 GLKNLEVFVKG--------PGPGRESAIRALNAVGYKITNITDVTPIP 118
>UniRef50_Q12G79 Cluster: 30S ribosomal protein S11; n=186; cellular
organisms|Rep: 30S ribosomal protein S11 - Polaromonas
sp. (strain JS666 / ATCC BAA-500)
Length = 134
Score = 49.6 bits (113), Expect = 4e-05
Identities = 31/108 (28%), Positives = 54/108 (50%)
Frame = -3
Query: 400 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 221
G+AH+ ASFN+T + +TD G +GG K R +++P+AA +A++
Sbjct: 24 GIAHVHASFNNTIITITDRQGNALSWASSGGQGFKGSR-KSTPFAAQVASEVAGRAAIEQ 82
Query: 220 GITALHIKLRAXXXXXXXXXXXGAQXALRAIARXSMKIGRIEDGTPGP 77
GI L ++++ G + ++RA+ ++I I D TP P
Sbjct: 83 GIKNLDVEIKG--------PGPGRESSVRALGALGIRINSIADVTPVP 122
>UniRef50_Q1IS96 Cluster: 30S ribosomal protein S11; n=274; cellular
organisms|Rep: 30S ribosomal protein S11 - Acidobacteria
bacterium (strain Ellin345)
Length = 142
Score = 49.6 bits (113), Expect = 4e-05
Identities = 33/108 (30%), Positives = 55/108 (50%)
Frame = -3
Query: 400 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 221
G+AHI ASFN+T V ++D SG + +G + + R + +P+AA AA A +
Sbjct: 32 GLAHIQASFNNTIVTISDPSGNVVSWKSSGSLGFRGSR-KGTPFAAQQAAMTAANMARDH 90
Query: 220 GITALHIKLRAXXXXXXXXXXXGAQXALRAIARXSMKIGRIEDGTPGP 77
G+ +L +++ G + A+RA+A + + I D TP P
Sbjct: 91 GMRSLDVRV--------AGPGSGRESAVRALAAAGLDVRVIRDVTPIP 130
>UniRef50_P04969 Cluster: 30S ribosomal protein S11; n=155; cellular
organisms|Rep: 30S ribosomal protein S11 - Bacillus
subtilis
Length = 131
Score = 48.0 bits (109), Expect = 1e-04
Identities = 30/108 (27%), Positives = 54/108 (50%)
Frame = -3
Query: 400 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 221
G+AHI ++FN+T V +TD G G + + R +++P+AA +AA+ A+
Sbjct: 21 GIAHIRSTFNNTIVTITDTHGNAISWSSAGALGFRGSR-KSTPFAAQMAAETAAKGSIEH 79
Query: 220 GITALHIKLRAXXXXXXXXXXXGAQXALRAIARXSMKIGRIEDGTPGP 77
G+ L + ++ G + A+RA+ +++ I D TP P
Sbjct: 80 GLKTLEVTVKG--------PGSGREAAIRALQAAGLEVTAIRDVTPVP 119
>UniRef50_O59305 Cluster: Putative uncharacterized protein PH1639;
n=1; Pyrococcus horikoshii|Rep: Putative uncharacterized
protein PH1639 - Pyrococcus horikoshii
Length = 102
Score = 46.0 bits (104), Expect = 5e-04
Identities = 28/99 (28%), Positives = 40/99 (40%)
Frame = +2
Query: 77 WSGGAIFNAANLHTXTXNRPKCXLSTRXRGLCFVSTSSTELYVQGRYAKSFAFLCYILCR 256
W+ + N + + P C L T R F S+ V + F C
Sbjct: 2 WNWSNVLNPSYFKSCPSQGPNCSLCTWPRSFAFASSWGPHPNVNTDNSLFQCFFCCSPSS 61
Query: 257 QHSSVG*RFITVSLHLHATSDTGDSFPAG*ISNMNECVI 373
+H +G R I VS + H T+ + F G ISN+N VI
Sbjct: 62 KHCCIGGRLIPVSFNYHTTAPSAYRFRTGDISNVNNGVI 100
>UniRef50_Q2GEB7 Cluster: 30S ribosomal protein S11; n=1;
Neorickettsia sennetsu str. Miyayama|Rep: 30S ribosomal
protein S11 - Neorickettsia sennetsu (strain Miyayama)
Length = 120
Score = 44.8 bits (101), Expect = 0.001
Identities = 31/110 (28%), Positives = 52/110 (47%)
Frame = -3
Query: 406 VFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCK 227
V G AH+ +FN+ ++ VTD G +G + K ++ +++ YAA A + K K
Sbjct: 8 VSGNAHVIVTFNNVYISVTDHQGNVQGWASSGSVGFKGNK-KSTAYAAQSVATTLMTKLK 66
Query: 226 TLGITALHIKLRAXXXXXXXXXXXGAQXALRAIARXSMKIGRIEDGTPGP 77
+G+ L++ L + ALRAI + I ++D TP P
Sbjct: 67 RIGLKILNVHL--------SGSNPIREAALRAIRNSGIVIISLQDMTPVP 108
>UniRef50_P56802 Cluster: Chloroplast 30S ribosomal protein S11;
n=85; Tracheophyta|Rep: Chloroplast 30S ribosomal
protein S11 - Arabidopsis thaliana (Mouse-ear cress)
Length = 138
Score = 44.0 bits (99), Expect = 0.002
Identities = 33/108 (30%), Positives = 48/108 (44%)
Frame = -3
Query: 400 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 221
GV H+ ASFN+T V VTD+ GR G + R +P+AA AA +
Sbjct: 28 GVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFRGTR-RGTPFAAQTAAGNAIRAVVDQ 86
Query: 220 GITALHIKLRAXXXXXXXXXXXGAQXALRAIARXSMKIGRIEDGTPGP 77
G+ ++++ G ALRAI R + + + D TP P
Sbjct: 87 GMQRAEVRIKG--------PGLGRDAALRAIRRSGILLSFVRDVTPMP 126
>UniRef50_Q98Q07 Cluster: 30S ribosomal protein S11; n=33;
Bacteria|Rep: 30S ribosomal protein S11 - Mycoplasma
pulmonis
Length = 136
Score = 42.3 bits (95), Expect = 0.007
Identities = 24/70 (34%), Positives = 40/70 (57%)
Frame = -3
Query: 400 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 221
GVAHI ++ N+T V +D G +G + K + + + YAA LAAQ+ +EK K
Sbjct: 21 GVAHIHSTHNNTIVTFSDEKGNVISWASSGTIGYKGTKKKTA-YAAGLAAQNASEKAKEH 79
Query: 220 GITALHIKLR 191
GI + ++++
Sbjct: 80 GIREVSVRVK 89
>UniRef50_A0NHE9 Cluster: Ribosomal protein S11; n=1; Oenococcus
oeni ATCC BAA-1163|Rep: Ribosomal protein S11 -
Oenococcus oeni ATCC BAA-1163
Length = 113
Score = 41.9 bits (94), Expect = 0.009
Identities = 22/70 (31%), Positives = 39/70 (55%)
Frame = -3
Query: 400 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 221
GVAHI ++FN+T V +TD +G G + K R +++P+AA LA + A+
Sbjct: 22 GVAHIHSTFNNTIVLITDEAGNAVSWSSAGSLGFKGSR-KSTPFAAQLAGEAAAKAAMEQ 80
Query: 220 GITALHIKLR 191
+ ++ I ++
Sbjct: 81 NMHSVAISVK 90
>UniRef50_Q4S8D4 Cluster: Chromosome undetermined SCAF14706, whole
genome shotgun sequence; n=3; cellular organisms|Rep:
Chromosome undetermined SCAF14706, whole genome shotgun
sequence - Tetraodon nigroviridis (Green puffer)
Length = 215
Score = 40.7 bits (91), Expect = 0.020
Identities = 25/107 (23%), Positives = 52/107 (48%)
Frame = -3
Query: 397 VAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLG 218
+AH+ A++N+T + VTD +G+ ++ R + G + + +++P AA A A K G
Sbjct: 106 IAHVKATYNNTHIQVTDSAGK-SMVRTSCGTEGFKNIKKSTPIAAQTAGISAAAKATAKG 164
Query: 217 ITALHIKLRAXXXXXXXXXXXGAQXALRAIARXSMKIGRIEDGTPGP 77
+T + + ++ A++ + +++ I D TP P
Sbjct: 165 VTFVRVVVKGLGPGRL--------SAIKGLTMGGLEVVSITDNTPVP 203
>UniRef50_Q6ASY6 Cluster: Small subunit ribosomal protein, putative;
n=19; Spermatophyta|Rep: Small subunit ribosomal
protein, putative - Oryza sativa subsp. japonica (Rice)
Length = 366
Score = 40.3 bits (90), Expect = 0.027
Identities = 19/67 (28%), Positives = 34/67 (50%)
Frame = -3
Query: 391 HIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGIT 212
H+ N TFV VTD+ G + G ++ + R S YAA A+ V + +G+
Sbjct: 248 HVLLKRNKTFVTVTDVRGNKKTGASAGCLEDRKGRSRLSKYAAEATAEHVGRAARKMGLK 307
Query: 211 ALHIKLR 191
++ +K++
Sbjct: 308 SVVMKVK 314
>UniRef50_Q0P3I7 Cluster: Rps11; n=1; Ostreococcus tauri|Rep: Rps11
- Ostreococcus tauri
Length = 121
Score = 40.3 bits (90), Expect = 0.027
Identities = 23/66 (34%), Positives = 34/66 (51%)
Frame = -3
Query: 388 IFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITA 209
I + N+TFV++TDL G +G + K + ++S YAA + V + C I
Sbjct: 15 ISTTLNNTFVNLTDLEGNTLCCVSSGSLGFKGSK-KSSSYAAQSTTEKVLQFCAQQSIEK 73
Query: 208 LHIKLR 191
L IKLR
Sbjct: 74 LMIKLR 79
>UniRef50_P46746 Cluster: Mitochondrial ribosomal protein S11; n=1;
Prototheca wickerhamii|Rep: Mitochondrial ribosomal
protein S11 - Prototheca wickerhamii
Length = 128
Score = 38.7 bits (86), Expect = 0.083
Identities = 27/106 (25%), Positives = 53/106 (50%)
Frame = -3
Query: 400 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 221
G+ HI ++ N+T + +TDL G G + K R +++ YA+ AA+ +A K
Sbjct: 18 GIVHIQSTTNNTLITLTDLEGNTQFFVSAGTLGFKNSR-KSTVYASGAAAEALASKAFNE 76
Query: 220 GITALHIKLRAXXXXXXXXXXXGAQXALRAIARXSMKIGRIEDGTP 83
G + +K++ G + A+R + + ++ I +I++ TP
Sbjct: 77 GYRTIIVKIKG--------LGYGKKSAIRGLQKSNLVIKQIQEVTP 114
>UniRef50_Q7YDI4 Cluster: Small subunit ribosomal protein; n=29;
Magnoliophyta|Rep: Small subunit ribosomal protein -
Berberis thunbergii (Japanese barberry)
Length = 150
Score = 38.3 bits (85), Expect = 0.11
Identities = 19/69 (27%), Positives = 33/69 (47%)
Frame = -3
Query: 397 VAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLG 218
+ H+ N+TFV VTD G + G ++ S YAA A+ V + LG
Sbjct: 46 LVHLLPLHNNTFVTVTDARGNKKTGASAGSLEEFKGGSRLSRYAAKATAEHVGRSARNLG 105
Query: 217 ITALHIKLR 191
+ ++ +K++
Sbjct: 106 MKSVVMKVK 114
>UniRef50_Q9PQN5 Cluster: 30S ribosomal protein S11; n=1; Ureaplasma
parvum|Rep: 30S ribosomal protein S11 - Ureaplasma
parvum (Ureaplasma urealyticum biotype 1)
Length = 121
Score = 38.3 bits (85), Expect = 0.11
Identities = 24/108 (22%), Positives = 53/108 (49%)
Frame = -3
Query: 400 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 221
G+A+I A+ N+T + + D G +G + K + + +PY+A +AA+ A+ +
Sbjct: 12 GIAYIHATKNNTIITLADEQGSVLSWASSGSIGYKGTK-KKTPYSAGIAAEAAAKAVIDM 70
Query: 220 GITALHIKLRAXXXXXXXXXXXGAQXALRAIARXSMKIGRIEDGTPGP 77
G+ ++ + + A+R++ +++ +I+D TP P
Sbjct: 71 GLKSVEVHVNG--------TGASRDTAIRSLQAAGLEVTKIKDVTPIP 110
>UniRef50_Q9C6S3 Cluster: 30S ribosomal protein S11, putative; n=2;
Arabidopsis thaliana|Rep: 30S ribosomal protein S11,
putative - Arabidopsis thaliana (Mouse-ear cress)
Length = 235
Score = 35.9 bits (79), Expect = 0.58
Identities = 19/73 (26%), Positives = 35/73 (47%)
Frame = -3
Query: 412 ETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEK 233
ET + HI N+TFV VTD G +G + + + Y A A+++ +
Sbjct: 111 ETNADIIHIKMLRNNTFVTVTDSKGNVKCKATSGSLPDLKGGRKMTNYTADATAENIGRR 170
Query: 232 CKTLGITALHIKL 194
K +G+ ++ +K+
Sbjct: 171 AKAMGLKSVVVKV 183
>UniRef50_UPI0000586F02 Cluster: PREDICTED: hypothetical protein
isoform 1; n=1; Strongylocentrotus purpuratus|Rep:
PREDICTED: hypothetical protein isoform 1 -
Strongylocentrotus purpuratus
Length = 261
Score = 35.5 bits (78), Expect = 0.77
Identities = 28/107 (26%), Positives = 51/107 (47%)
Frame = -3
Query: 397 VAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLG 218
+ +I A++N+T V V + +GR T+AR + G + + + + AA AA A K G
Sbjct: 152 IVNIKATYNNTHVSVAEHTGR-TVARTSCGTEGFKNAKKGTAIAAQTAAIAAATKAVDKG 210
Query: 217 ITALHIKLRAXXXXXXXXXXXGAQXALRAIARXSMKIGRIEDGTPGP 77
+ A+ + ++ G Q +++ + + I I D TP P
Sbjct: 211 MNAVRVVIKG--------IGPGRQTSIKGLQMGGLDIVSITDNTPVP 249
>UniRef50_P30059 Cluster: Plastid 30S ribosomal protein S11; n=4;
Streptophyta|Rep: Plastid 30S ribosomal protein S11 -
Epifagus virginiana (Beechdrops)
Length = 136
Score = 35.5 bits (78), Expect = 0.77
Identities = 20/50 (40%), Positives = 26/50 (52%)
Frame = -3
Query: 400 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAA 251
GV H+ SFN+T V VTD+ GR G K R + +AA +AA
Sbjct: 28 GVIHVQTSFNNTIVAVTDIKGRVVSWSSAGTCGFKGTR-RGTSFAAQIAA 76
>UniRef50_Q9TLV1 Cluster: Chloroplast 30S ribosomal protein S11;
n=10; cellular organisms|Rep: Chloroplast 30S ribosomal
protein S11 - Cyanidium caldarium
Length = 129
Score = 33.9 bits (74), Expect = 2.3
Identities = 20/69 (28%), Positives = 35/69 (50%)
Frame = -3
Query: 400 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 221
G+ I ++FN+T V TD G+ IA +GG + + +P+AA A + + +
Sbjct: 19 GLIIINSTFNNTIVTATDCYGK-VIAWASGGTEGFKGAKKGTPFAAQSATEKLIKALLEQ 77
Query: 220 GITALHIKL 194
G +HI +
Sbjct: 78 GTQRIHISV 86
>UniRef50_Q8W9P7 Cluster: Ribosomal protein S11; n=1; Mesostigma
viride|Rep: Ribosomal protein S11 - Mesostigma viride
Length = 128
Score = 33.1 bits (72), Expect = 4.1
Identities = 19/70 (27%), Positives = 35/70 (50%)
Frame = -3
Query: 400 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 221
G+ H+ + N+T + +TD G TI + GM + + +A+ AQ + +CK L
Sbjct: 18 GILHVQTTLNNTIMTLTDRKG-NTIFGFSSGMLGFGGSRKKTRFASRSVAQHMVLRCKQL 76
Query: 220 GITALHIKLR 191
I L + ++
Sbjct: 77 RIQRLILAIK 86
>UniRef50_Q49081 Cluster: 30S ribosomal protein; n=1; Mycoplasma
capricolum|Rep: 30S ribosomal protein - Mycoplasma
capricolum
Length = 80
Score = 32.3 bits (70), Expect = 7.2
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = -3
Query: 400 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYA 266
G+AHI ++FN+T V V+D G G + K + +++PYA
Sbjct: 11 GIAHIHSTFNNTIVTVSDEKGNVLSWSSAGAIGFKGSK-KSTPYA 54
>UniRef50_Q0CSH9 Cluster: Predicted protein; n=1; Aspergillus
terreus NIH2624|Rep: Predicted protein - Aspergillus
terreus (strain NIH 2624)
Length = 399
Score = 31.9 bits (69), Expect = 9.5
Identities = 18/42 (42%), Positives = 21/42 (50%)
Frame = +1
Query: 238 LLHPVPPT*QRRVTLHHGQPSPSCHQ*HGR*FPGRINQ*HER 363
L HP P V L HG PSPS + G FPG ++ H R
Sbjct: 12 LPHPHPTLSPASVDLDHGSPSPSLNAVCGPGFPGVLSLHHYR 53
>UniRef50_P25370 Cluster: Good for full DBP5 activity protein 2;
n=2; Saccharomyces cerevisiae|Rep: Good for full DBP5
activity protein 2 - Saccharomyces cerevisiae (Baker's
yeast)
Length = 566
Score = 31.9 bits (69), Expect = 9.5
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = -3
Query: 424 HLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASP 272
H G + H+F F D V+ +SG + + +V G +KV +RD P
Sbjct: 461 HNAGNDAYYTLHLFMKFCD--VNFRKISGMDDVLKVMGQVKVWGERDVREP 509
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 519,152,137
Number of Sequences: 1657284
Number of extensions: 10289118
Number of successful extensions: 22805
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 21955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22794
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 33739557507
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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