Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_D08
         (534 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein S14|Sc...   177   1e-45
SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein S14|Schizosa...   177   1e-45
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ...    28   0.76 
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    28   1.0  
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha...    26   3.1  
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          26   3.1  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   5.4  
SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase |Schizo...    25   9.4  

>SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein
           S14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score =  177 bits (430), Expect = 1e-45
 Identities = 88/124 (70%), Positives = 97/124 (78%)
 Frame = -3

Query: 436 LGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAML 257
           +GPQ   GE VFGVAHIFASFNDTFVH+TDL+G+ETI RVTGGMKVK DRDE+SPYAAML
Sbjct: 5   VGPQIRSGELVFGVAHIFASFNDTFVHITDLTGKETIVRVTGGMKVKTDRDESSPYAAML 64

Query: 256 AAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXGAQXALRAIARXSMKIGRIEDGTPGP 77
           AAQD A KCK +GITALHIK+RA           GAQ ALRA+AR  M+IGRIED TP P
Sbjct: 65  AAQDAAAKCKEVGITALHIKIRATGGTATKTPGPGAQAALRALARAGMRIGRIEDVTPIP 124

Query: 76  XDXT 65
            D T
Sbjct: 125 TDST 128


>SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein
           S14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score =  177 bits (430), Expect = 1e-45
 Identities = 88/124 (70%), Positives = 97/124 (78%)
 Frame = -3

Query: 436 LGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAML 257
           +GPQ   GE VFGVAHIFASFNDTFVH+TDL+G+ETI RVTGGMKVK DRDE+SPYAAML
Sbjct: 5   VGPQIRSGELVFGVAHIFASFNDTFVHITDLTGKETIVRVTGGMKVKTDRDESSPYAAML 64

Query: 256 AAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXGAQXALRAIARXSMKIGRIEDGTPGP 77
           AAQD A KCK +GITALHIK+RA           GAQ ALRA+AR  M+IGRIED TP P
Sbjct: 65  AAQDAAAKCKEVGITALHIKIRATGGTATKTPGPGAQAALRALARAGMRIGRIEDVTPIP 124

Query: 76  XDXT 65
            D T
Sbjct: 125 TDST 128


>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
           Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 28.3 bits (60), Expect = 0.76
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 37  CVLFGHPSSGSXLXVRGCHLQCGQSSYLXXQSPEV 141
           C++FG P +G  L  R C  Q   +++L   +P++
Sbjct: 222 CLMFGPPGTGKTLLARACAAQ-SNATFLKLAAPQL 255


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 334 ETIARVTGGMKVKADRDEASPYAAMLAAQDVAEK 233
           ET+  V G +KV  + +  + Y A +AAQ V EK
Sbjct: 347 ETLKAVLGEIKVPTNEEVIAKYVANIAAQLVEEK 380


>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +3

Query: 426 WGPRVTWTSSLATLFFL 476
           +GPR+ WTSS ++L F+
Sbjct: 304 FGPRIFWTSSQSSLMFV 320


>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 674

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -1

Query: 405 CLV*HTFSLHSMTHSFMLLIYPAGKLSPVSLVA*R*RLTVMKRHPTLLCWR 253
           CLV  T S++ + +  ++          VSLV    +L ++KR P LL W+
Sbjct: 317 CLVYSTCSINPIENEAVVTAALKATGGAVSLVDVSKKLPLLKRDPGLLSWK 367


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = -2

Query: 362 RSCY*FIRP--GNYRPCHWWHEGE 297
           RSC+  +R    N++ C WW EG+
Sbjct: 347 RSCHSALRSIFTNFKGCTWWIEGD 370


>SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 360

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 444 WTSSLATLFFLGAMAQPLA*ELSKSKSNSF 533
           W+S ++ LFF  A+ QPL  +   S  + F
Sbjct: 2   WSSIISFLFFSVALCQPLLFQKRSSNVSDF 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,039,858
Number of Sequences: 5004
Number of extensions: 38696
Number of successful extensions: 95
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)