Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_D05
         (720 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0612 + 30602862-30603410                                         59   4e-09
02_03_0161 + 15828887-15828985,15829066-15829686,15829759-158299...    29   2.8  
04_03_0150 + 11877714-11878487,11880928-11881245                       29   3.7  
08_02_1188 + 25053594-25054941,25055025-25055650                       28   6.5  

>01_06_0612 + 30602862-30603410
          Length = 182

 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 29/82 (35%), Positives = 45/82 (54%)
 Frame = -3

Query: 457 KRRVFRLAAHYIGRRRNCYSIAVRNVHRALVYATKARKLKKEDMKSLWDVRITAACEQHN 278
           K ++F+LA  + GR +NC  IA   V +AL Y+ + R  KK DM+SLW  RI A    H 
Sbjct: 3   KGKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRHNKKRDMRSLWIERINAGTRLHG 62

Query: 277 ITLFSLREGLDRANIMLDRKSL 212
           + +   +      ++++ RK L
Sbjct: 63  VCIHCTQAVKKEISLVVARKDL 84


>02_03_0161 +
           15828887-15828985,15829066-15829686,15829759-15829908,
           15829994-15830389,15830455-15830487,15830553-15830693,
           15830793-15830924,15830999-15831082,15831159-15831461,
           15831543-15831734,15831805-15831942,15832019-15832143,
           15832223-15832319
          Length = 836

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +3

Query: 84  RFXFLPVGXHLSCPSMXLSVSSLYLATAARASNVFGSHEAKSDKDFLSNII 236
           RF    +G ++ CP+    VSS YLA      N+   + A+  +D+L N +
Sbjct: 173 RFVLFTIG-YILCPTTKPIVSSQYLALLKDIDNIKNINWARITRDYLINCL 222


>04_03_0150 + 11877714-11878487,11880928-11881245
          Length = 363

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -3

Query: 463 WRKRRVFRLAAHYIGRRRNCYSIAVRNVHR--ALVYATKARKLKKEDMKSLWDVR 305
           WR+R  +RL AH +G R N     V +     A+ ++    +  +E +++ W  R
Sbjct: 219 WRRRASWRLGAHGVGLRVNAAGFVVEDASTVVAVDFSDPTARSSEEPVEAPWRSR 273


>08_02_1188 + 25053594-25054941,25055025-25055650
          Length = 657

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 478 GPDEFWRKRRVFRLAAHYIGRRRN 407
           G D  WR+RR F   A  IGR R+
Sbjct: 393 GSDSGWRRRRAFETEAAAIGRARH 416


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,754,934
Number of Sequences: 37544
Number of extensions: 341738
Number of successful extensions: 693
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)