Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_D05
         (720 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117203-7|CAB55109.1|  191|Caenorhabditis elegans Hypothetical ...    53   2e-07
AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical ...    28   5.8  

>AL117203-7|CAB55109.1|  191|Caenorhabditis elegans Hypothetical
           protein Y48C3A.10 protein.
          Length = 191

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 30/107 (28%), Positives = 53/107 (49%)
 Frame = -3

Query: 475 PDEFWRKRRVFRLAAHYIGRRRNCYSIAVRNVHRALVYATKARKLKKEDMKSLWDVRITA 296
           PD + ++ R+ R  A      R+    A R   +   Y    R+ ++   K   + R+  
Sbjct: 26  PDVWMKRERLNRFTAWQYASERSTVKGAYRKEDKIFAYLNMQRQDERNLEKFHAEERVRT 85

Query: 295 ACEQHNITLFSLREGLDRANIMLDRKSLSDLASWEPKTFEALAAVAK 155
           A E+H++     +  L +++I+LD   LS LA +EP++F +L A AK
Sbjct: 86  ALEEHDMEYSKFKSILSQSHILLDNICLSQLAIYEPRSFRSLVAFAK 132


>AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical
           protein Y106G6D.7 protein.
          Length = 948

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 21/70 (30%), Positives = 31/70 (44%)
 Frame = +3

Query: 51  HSTMPLTSTSLRFXFLPVGXHLSCPSMXLSVSSLYLATAARASNVFGSHEAKSDKDFLSN 230
           H T PLT +S++  F P G H+       S++    AT  R +   G    +SDK     
Sbjct: 467 HPTAPLTLSSVKTVFGPGGIHMHTIIRLDSIAD--YATMMRRNGEQGIKIQQSDKKSFDT 524

Query: 231 IILALSKPSL 260
            I  +  PS+
Sbjct: 525 AIDGIPIPSV 534


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,901,168
Number of Sequences: 27780
Number of extensions: 324060
Number of successful extensions: 761
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)