Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_D04
         (571 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0454 + 8626832-8627134,8627255-8627606,8627705-8627748,862...    29   2.6  

>03_02_0454 +
           8626832-8627134,8627255-8627606,8627705-8627748,
           8629014-8629035,8629136-8629350,8629468-8629592,
           8629681-8629756
          Length = 378

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -1

Query: 544 VIVYTLHGQLLRTIGA-AILAALPSAFRFIPTPRLTVTRHATHRRKS 407
           ++V TL G    T  A  +   LP++  FIP+P  T  R   H ++S
Sbjct: 332 IMVGTLTGAQWATYDAFKVFVGLPTSGGFIPSPAATDLRQVDHEKRS 378


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,616,161
Number of Sequences: 37544
Number of extensions: 186431
Number of successful extensions: 321
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)