Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_D04
         (571 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z36752-3|CAA85325.1|  422|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U21321-5|AAL11111.1|  553|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U21321-4|AAG00049.1|  587|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U47144-5|AAB52621.2| 1410|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z70307-9|CAE54887.1|  246|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z70307-8|CAA94333.2|  248|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>Z36752-3|CAA85325.1|  422|Caenorhabditis elegans Hypothetical
           protein F35H8.3 protein.
          Length = 422

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 484 ALPSAFRFIPTPRLTVTRHATHRRKSLRRCNKKFHFKKELII 359
           A P+ F   P P   +  +    R S   CN +FHFKK++++
Sbjct: 277 AHPATFDSGPPPE-DLLPNGKSARYSCSYCNLRFHFKKDMLV 317


>U21321-5|AAL11111.1|  553|Caenorhabditis elegans Hypothetical
           protein ZK177.8b protein.
          Length = 553

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = -3

Query: 524 RSAAANYRRRHIGCSAERLSLYPYSAADRHATCNTQTKKFETM 396
           ++A    +RR IGC      + P +A      CN QT   E +
Sbjct: 361 QTALLKIQRREIGCKLGYFEMNPENATQLKGNCNNQTGAAEVV 403


>U21321-4|AAG00049.1|  587|Caenorhabditis elegans Hypothetical
           protein ZK177.8a protein.
          Length = 587

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = -3

Query: 524 RSAAANYRRRHIGCSAERLSLYPYSAADRHATCNTQTKKFETM 396
           ++A    +RR IGC      + P +A      CN QT   E +
Sbjct: 395 QTALLKIQRREIGCKLGYFEMNPENATQLKGNCNNQTGAAEVV 437


>U47144-5|AAB52621.2| 1410|Caenorhabditis elegans Hypothetical protein
            ZC53.4 protein.
          Length = 1410

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = -3

Query: 251  LNCLEFGMRLSRSHQIVLFRD 189
            L CL+ G++L + H+I+ F++
Sbjct: 1316 LQCLQLGLKLKKIHRIITFKE 1336


>Z70307-9|CAE54887.1|  246|Caenorhabditis elegans Hypothetical
           protein C39E9.8b protein.
          Length = 246

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 424 THRRKSLRRCNKKFHFKKE 368
           T  R+S R C KK H+K+E
Sbjct: 191 TKARQSFRACTKKMHWKRE 209


>Z70307-8|CAA94333.2|  248|Caenorhabditis elegans Hypothetical
           protein C39E9.8a protein.
          Length = 248

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 424 THRRKSLRRCNKKFHFKKE 368
           T  R+S R C KK H+K+E
Sbjct: 191 TKARQSFRACTKKMHWKRE 209


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,556,894
Number of Sequences: 27780
Number of extensions: 175650
Number of successful extensions: 309
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)