Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_D03
         (756 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.3  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   4.1  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   5.4  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   5.4  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = -2

Query: 689  EVWPRISRMEITIGRSLCTKSSPLPKQQTYTHSSCLYPRVMKRIWVRTVLSCQ 531
            ++W  +  ME+    +L T  + L K   YT     + RV   +   TV  CQ
Sbjct: 1157 DMWRSVDEMEVRKTSALTTVLTGLRKYTNYTIQVLAFTRVGDGV-PTTVTYCQ 1208


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = -2

Query: 689  EVWPRISRMEITIGRSLCTKSSPLPKQQTYTHSSCLYPRVMKRIWVRTVLSCQ 531
            ++W  +  ME+    +L T  + L K   YT     + RV   +   TV  CQ
Sbjct: 1153 DMWRSVDEMEVRKTSALTTVLTGLRKYTNYTIQVLAFTRVGDGV-PTTVTYCQ 1204


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 631 FVHSDLPIVISIRDILGQTSVQEHRL 708
           F++  +PI +SI D L    + EHR+
Sbjct: 407 FINKIIPIRMSIHDELLGADLVEHRI 432


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 363 LSTVKDADLICVIDKGKIVERGTHA 289
           LS+V+D+ +IC  +K   V RG  A
Sbjct: 345 LSSVRDSSIICGGNKRSQVFRGRDA 369


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = -2

Query: 236 WLNYFSHNAFYTRVFLFLFSYFEI 165
           +L + S  +FY  +F+ +F+Y++I
Sbjct: 206 YLIFSSTISFYLPLFVMVFTYYKI 229


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,442
Number of Sequences: 438
Number of extensions: 4460
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)