Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_C22
         (812 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom...   167   2e-42
SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha...   149   5e-37
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s...    26   5.5  
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    26   7.3  
SPAC18G6.07c |mra1||ribosome biogenesis protein Mra1|Schizosacch...    26   7.3  
SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   9.7  

>SPAC6F12.13c |fps1||geranyltranstransferase
           Fps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score =  167 bits (406), Expect = 2e-42
 Identities = 81/230 (35%), Positives = 131/230 (56%), Gaps = 1/230 (0%)
 Frame = -3

Query: 807 DIMDGSSVRRGMPCWYRRPEVGITCAFXDSLLIHSSLFEFXKTNFRTNPNYMKMFELFNE 628
           DIMD S  RRG PCWY  P VG   A  D+ ++ S+++   K +FR    Y+ + ELF++
Sbjct: 96  DIMDASKTRRGQPCWYLMPGVG-NIAINDAFMVESAIYFLLKKHFRQESCYVDLIELFHD 154

Query: 627 TLWRTSMGQHLDHVTGNRKT-DYSSFTLDRXXXXXXXXXXXXXYNLPVSLGLLLAENVDE 451
             ++T +GQ LD +T    + D S F+L +             + LPV+L + LA     
Sbjct: 155 VTFQTELGQQLDLLTAPEDSVDLSKFSLQKHSFIVIYKTAFYSFYLPVALAMHLAGVATP 214

Query: 450 KIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCTWLAVQALQRCTEAQ 271
           +  K AQDI + +G  FQ+QDD++DC+GD   TGK+GTDI + KC+W+   AL +CT  Q
Sbjct: 215 ENLKCAQDILIILGKYFQVQDDYLDCYGDPTVTGKIGTDILDNKCSWIINLALAKCTPEQ 274

Query: 270 RTVFKACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENI 121
           R +    YG  +    +R+K ++E+L++   +++ E++    I + I+ +
Sbjct: 275 RVILDDNYGRKDSESEKRVKAVFEELNIRGEFENYEESEVSEIKKLIDGV 324


>SPBC36.06c |spo9||farnesyl pyrophosphate
           synthetase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 351

 Score =  149 bits (361), Expect = 5e-37
 Identities = 82/251 (32%), Positives = 130/251 (51%), Gaps = 3/251 (1%)
 Frame = -3

Query: 807 DIMDGSSVRRGMPCWYRRPEVGITCAFXDSLLIHSSLFEFXKTNFRTNPNYMKMFELFNE 628
           DIMD S  RRG+ CWY    VG+  A  +S L+ + +    +  FR  P Y+ + + F E
Sbjct: 101 DIMDQSIKRRGLDCWYL--VVGVRRAINESQLLEACIPLLIRKYFRNMPYYVDLLDTFRE 158

Query: 627 TLWRTSMGQHLDHVTG-NRKTDYSSFTLDRXXXXXXXXXXXXXYNLPVSLGLLLAENVDE 451
             + T +GQ  D ++  + +    SF L +             + LP+   LLL+ N ++
Sbjct: 159 VTFLTELGQQEDLLSSRDGEASLRSFDLMKYDFIITYKTSFYSFYLPIKCALLLSRNSNQ 218

Query: 450 KIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCTWLAVQALQRCTEAQ 271
           K Y +   +   +G  FQ+QDD++DCFGD    GKVG DIQ+ KCTWL   A +  +  Q
Sbjct: 219 KAYDTTIKLSKLLGYYFQVQDDYLDCFGDYTVLGKVGMDIQDNKCTWLVCYAEKFASADQ 278

Query: 270 RTVFKACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENIPIEAA--RVL 97
             + +A YG +   ++  IK+LY +L +P++Y   E  M D+I ++I+ I       + +
Sbjct: 279 LNLLRAHYGKAGSENIAVIKQLYHELQIPELYHKFEDDMVDSISKEIDLIDESTGLKKCI 338

Query: 96  FKKLLDITYNR 64
           F K   + Y R
Sbjct: 339 FTKFFQLIYKR 349


>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
           subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = -3

Query: 414 IGTMFQIQDDFIDCFGDEIKTGK-VGTDIQERKCTWLAVQALQRCTEAQRTVFKACYGSS 238
           IGT FQ+ DD +D    +   GK  G D++    T   + A ++  E    +       +
Sbjct: 262 IGTAFQLMDDVLDYTSKDDTLGKAAGADLKLGLATAPVLFAWKKYPELGAMIVNR---FN 318

Query: 237 EPAHVERIKRLYE 199
            P+ ++R + L E
Sbjct: 319 HPSDIQRARSLVE 331


>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -3

Query: 225 VERIKRLYEDLHLPQIYKHQEKAMYDNIIRQ 133
           ++R ++  E++H+PQ+Y     + Y  I +Q
Sbjct: 130 IDRNRKYTEEIHIPQVYSVLFPSKYFGIAKQ 160


>SPAC18G6.07c |mra1||ribosome biogenesis protein
           Mra1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 432 QDICLEIGTMFQIQDDFIDCFGDE 361
           Q +C+ IG M    DDF D + DE
Sbjct: 307 QSVCIAIGAMAHGPDDFSDGWVDE 330


>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -1

Query: 464 KMWMKKFINLLKTFAWK*ERCS 399
           K  +K+F NLLKTFA + ER +
Sbjct: 93  KRRIKRFRNLLKTFACRIERAN 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,346,955
Number of Sequences: 5004
Number of extensions: 68131
Number of successful extensions: 217
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)