Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_C22
(812 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0411 + 29151647-29151790,29152974-29153039,29153398-291535... 180 9e-46
04_04_1432 - 33558895-33559023,33559215-33559286,33559405-335594... 148 6e-36
05_06_0265 - 26759960-26760088,26760315-26760386,26760457-267605... 146 1e-35
04_04_1431 - 33551127-33551300,33551362-33551433,33551508-335515... 112 3e-25
01_06_0363 - 28745581-28745709,28746043-28746114,28746373-287464... 98 6e-21
07_03_1039 - 23454130-23454552,23454859-23455536 35 0.067
09_04_0692 + 19502878-19502920,19505011-19505104,19505196-195052... 30 1.9
08_02_0370 - 16333471-16333526,16333821-16333912,16334553-163346... 29 5.8
>01_06_0411 +
29151647-29151790,29152974-29153039,29153398-29153538,
29153638-29153724,29153968-29154084,29154177-29154265,
29154510-29154561,29154667-29154762,29154835-29154879,
29155002-29155091,29155164-29155235,29155490-29155618
Length = 375
Score = 180 bits (439), Expect = 9e-46
Identities = 91/251 (36%), Positives = 147/251 (58%), Gaps = 2/251 (0%)
Frame = -3
Query: 807 DIMDGSSVRRGMPCWYRRPEVGITCAFXDSLLIHSSLFEFXKTNFRTNPNYMKMFELFNE 628
DIMD S RRG PCW+R P+VG+ A D +++ + + + +F+ Y+ + +LFNE
Sbjct: 127 DIMDNSQTRRGQPCWFRVPQVGLI-AVNDGIILRNHISRILQRHFKGKLYYVDLIDLFNE 185
Query: 627 TLWRTSMGQHLDHVTGNR-KTDYSSFTLDRXXXXXXXXXXXXXYNLPVSLGLLLA-ENVD 454
++T+ GQ LD +T + + D + + L + LPV+ LLL+ EN+D
Sbjct: 186 VEFKTASGQLLDLITTHEGEKDLTKYNLTVHRRIVQYKTAYYSFYLPVACALLLSGENLD 245
Query: 453 EKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCTWLAVQALQRCTEA 274
+ ++I +E+GT FQ+QDD++DC+GD GK+GTDI++ KC+WL VQAL+R E
Sbjct: 246 N--FGDVKNILVEMGTYFQVQDDYLDCYGDPEFIGKIGTDIEDYKCSWLVVQALERADEN 303
Query: 273 QRTVFKACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENIPIEAARVLF 94
Q+ + YG +P V ++K LY++L+L ++ E+ Y+ +I IE P +A + +
Sbjct: 304 QKHILFENYGKPDPECVAKVKDLYKELNLEAVFHEYERESYNKLIADIEAHPNKAVQNVL 363
Query: 93 KKLLDITYNRQ 61
K L Y RQ
Sbjct: 364 KSFLHKIYKRQ 374
>04_04_1432 -
33558895-33559023,33559215-33559286,33559405-33559494,
33559574-33559618,33559693-33559788,33559905-33559956,
33560044-33560132,33560226-33560342,33560448-33560534,
33560646-33560761,33560854-33560878,33561816-33562121
Length = 407
Score = 148 bits (358), Expect = 6e-36
Identities = 82/250 (32%), Positives = 129/250 (51%), Gaps = 1/250 (0%)
Frame = -3
Query: 807 DIMDGSSVRRGMPCWYRRPEVGITCAFXDSLLIHSSLFEFXKTNFRTNPNYMKMFELFNE 628
DI D + RR CWY+ P VG++ A D +L+ + K F+ ++ + EL+NE
Sbjct: 159 DITDNAYTRRDNLCWYKLPTVGMS-AINDGVLLKCHVQAIIKRYFKEKFYFLDLMELWNE 217
Query: 627 TLWRTSMGQHLDHVTGNRKT-DYSSFTLDRXXXXXXXXXXXXXYNLPVSLGLLLAENVDE 451
+T+MGQ LD +T + D + + + + LPV+ LLL
Sbjct: 218 IGLQTAMGQMLDLITTHTGAKDLARYRIQGYRRIVKYKTSYYSFYLPVACALLL-NGARL 276
Query: 450 KIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCTWLAVQALQRCTEAQ 271
Y +++ +E+G FQIQDD++DCFGD GKVGTDI++ KC+WL VQA++ E +
Sbjct: 277 SDYVELKNVLIEMGVYFQIQDDYLDCFGDPEVIGKVGTDIEDYKCSWLIVQAMELANENE 336
Query: 270 RTVFKACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENIPIEAARVLFK 91
+ YG S+P V +K +Y +L L I+ E +Y +++ I+ A R + K
Sbjct: 337 MKILYENYGKSDPKCVAEVKSVYRELDLQDIFLEYESRVYKHLVSTIDAETDRAIRDILK 396
Query: 90 KLLDITYNRQ 61
L Y R+
Sbjct: 397 SFLKKIYRRK 406
>05_06_0265 -
26759960-26760088,26760315-26760386,26760457-26760546,
26760649-26760693,26760785-26760880,26760980-26761031,
26761209-26761297,26761388-26761504,26761680-26761737,
26761834-26761936,26762027-26762051,26762677-26762826
Length = 341
Score = 146 bits (355), Expect = 1e-35
Identities = 76/225 (33%), Positives = 124/225 (55%), Gaps = 1/225 (0%)
Frame = -3
Query: 732 AFXDSLLIHSSLFEFXKTNFRTNPNYMKMFELFNETLWRTSMGQHLDHVTGNR-KTDYSS 556
A D +++ + + + +FR Y + +LFNE ++T+ GQ LD +T + + D +
Sbjct: 117 AINDGIILRNHITRMLRLHFRGKLYYADLLDLFNEVEFKTASGQLLDLITTHEGEKDLNK 176
Query: 555 FTLDRXXXXXXXXXXXXXYNLPVSLGLLLAENVDEKIYKSAQDICLEIGTMFQIQDDFID 376
+ + + LPV+ LLL+ D Y + +DI +++G FQ+QDD++D
Sbjct: 177 YNIGVHRRIVQYKTSYYSFYLPVACALLLSGE-DLTKYGAVEDILVKMGIYFQVQDDYLD 235
Query: 375 CFGDEIKTGKVGTDIQERKCTWLAVQALQRCTEAQRTVFKACYGSSEPAHVERIKRLYED 196
C+GD GK+GTDI++ KC+WL VQAL+R E+Q++V YG +PA V ++K LY +
Sbjct: 236 CYGDPKFIGKIGTDIEDYKCSWLVVQALERADESQKSVLFENYGKKDPACVAKVKSLYRE 295
Query: 195 LHLPQIYKHQEKAMYDNIIRQIENIPIEAARVLFKKLLDITYNRQ 61
L+L ++ E Y +I IE P A + + K L Y RQ
Sbjct: 296 LNLEAVFLDYENESYKKLIADIEAQPSIAVQNVLKSFLHKIYKRQ 340
>04_04_1431 -
33551127-33551300,33551362-33551433,33551508-33551597,
33551671-33551715,33551785-33551880,33552245-33552296,
33552412-33552500,33552590-33552887,33553007-33553109,
33553328-33553352,33553503-33553763
Length = 434
Score = 112 bits (270), Expect = 3e-25
Identities = 74/246 (30%), Positives = 119/246 (48%), Gaps = 16/246 (6%)
Frame = -3
Query: 750 EVGITCAFXDSLLIHSSLFEFXKTNFRTNPNYMKMFELFNETLWRTSMGQHLDHV-TGNR 574
+VG+ D +++ + K FR P ++ + E+++E +TS+GQ LD + T
Sbjct: 190 QVGLR-GINDGIILKCHILIMIKKYFREKPYFLDILEIWSEIALQTSLGQMLDLISTHTG 248
Query: 573 KTDYSSFTLDRXXXXXXXXXXXXXYNLPVSLGLLLAENVDEKIYKSAQDICLEIGTMFQI 394
D + ++++ + LPV+ LLL+ E + +DI +E+G FQI
Sbjct: 249 ADDLAKYSIEGYRRIVKYKTAYYSFYLPVANALLLSGAKLED-FSGLKDILIEMGIYFQI 307
Query: 393 QDDFIDCFGDEIKTGKVGTDIQERKCTWLAVQALQRCTEAQRTVFKACYGSSEPAHVERI 214
QDD++DCF D GK+GTDI++ KC+WL VQAL Q V YG + + V +
Sbjct: 308 QDDYLDCFADPNTIGKIGTDIEDHKCSWLIVQALGHADNNQIEVLHRNYGKKDSSSVSEV 367
Query: 213 KRLYEDLHL--------------PQ-IYKHQEKAMYDNIIRQIENIPIEAARVLFKKLLD 79
KR Y L L PQ I+ E+ Y++++ IE AAR + L
Sbjct: 368 KRTYAALDLKIWAIDLADCEFCPPQDIFSEFERRCYNHLVTSIEAQKDHAAREILISFLK 427
Query: 78 ITYNRQ 61
+ R+
Sbjct: 428 KIHQRK 433
>01_06_0363 -
28745581-28745709,28746043-28746114,28746373-28746417,
28746523-28746618,28747029-28747080,28747232-28747305,
28747386-28747502,28747844-28747930,28748186-28748281,
28748508-28748654
Length = 304
Score = 98.3 bits (234), Expect = 6e-21
Identities = 57/155 (36%), Positives = 83/155 (53%), Gaps = 1/155 (0%)
Frame = -3
Query: 807 DIMDGSSVRRGMPCWYRRPEVGITCAFXDSLLIHSSLFEFXKTNFRTNPNYMKMFELFNE 628
DIMD S RRG PCW+R P+VG+ A D L++ S + + FR Y+ + +LFNE
Sbjct: 91 DIMDNSQTRRGKPCWFRLPKVGL-IAINDGLVLRSQISRIFRRYFRGKSYYVDLLDLFNE 149
Query: 627 TLWRTSMGQHLDHVTGNRKTDYSSFTLDRXXXXXXXXXXXXXYNLPVSLGLLL-AENVDE 451
+T+ GQ LD +T T+ L++ + LPV+ LLL E++D
Sbjct: 150 VEIQTTSGQLLDQIT----TNEGRKDLNKYRRIVEYKTAYYSFYLPVACALLLFDESLDN 205
Query: 450 KIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGK 346
Y + I +E+G FQ QDD++DCFG+ GK
Sbjct: 206 --YAQVKHILVEMGVYFQSQDDYLDCFGEPEIIGK 238
Score = 57.2 bits (132), Expect = 1e-08
Identities = 27/74 (36%), Positives = 39/74 (52%)
Frame = -3
Query: 285 CTEAQRTVFKACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENIPIEAA 106
C + K YG S+PA V ++K LY +LHL +++ E+ Y+ +I IE P EA
Sbjct: 229 CFGEPEIIGKENYGKSDPACVAKVKDLYNELHLQRVFSEYERESYEKLISAIEAQPNEAV 288
Query: 105 RVLFKKLLDITYNR 64
R + K L Y R
Sbjct: 289 RAVLKSFLHKIYKR 302
>07_03_1039 - 23454130-23454552,23454859-23455536
Length = 366
Score = 35.1 bits (77), Expect = 0.067
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = -3
Query: 489 VSLGLLLAENVDEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGK-VGTDIQERKCT 313
V +G +L DE+I +S + IG +FQ+ DD +D + GK G D+ K T
Sbjct: 260 VVIGAILGGGSDEQI-ESLRMYARSIGLLFQVVDDILDVTKSSEELGKTAGKDLASDKTT 318
Query: 312 WLAVQALQRCTE 277
+ + L++ E
Sbjct: 319 YPKLLGLEKSRE 330
>09_04_0692 +
19502878-19502920,19505011-19505104,19505196-19505227,
19505833-19506074,19506758-19506994,19508283-19508396
Length = 253
Score = 30.3 bits (65), Expect = 1.9
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 91 FKENAGGLYWYIFNLSYNIVVH 156
F++ GG+YWY F YN+V+H
Sbjct: 231 FRDFTGGMYWYAF--IYNVVLH 250
>08_02_0370 -
16333471-16333526,16333821-16333912,16334553-16334671,
16335152-16335226,16335328-16335393,16335507-16335563,
16335640-16335689,16335774-16335944,16337057-16337183,
16337658-16338017
Length = 390
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/70 (22%), Positives = 35/70 (50%)
Frame = -3
Query: 483 LGLLLAENVDEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCTWLA 304
L +++ E + + +++ + T++Q+ + ID G E+K ++ IQE C L
Sbjct: 215 LPIIVLEMPSVLLMAAIRNVHIARPTIYQVVKEMIDKMGYEVKLVRINKRIQEAYCAELF 274
Query: 303 VQALQRCTEA 274
+ + TE+
Sbjct: 275 LTKVGDHTES 284
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,012,901
Number of Sequences: 37544
Number of extensions: 405975
Number of successful extensions: 863
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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