Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_C22
         (812 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81106-1|CAB03221.2|  352|Caenorhabditis elegans Hypothetical pr...   148   5e-36
Z29095-13|CAA82357.1|  810|Caenorhabditis elegans Hypothetical p...    29   4.0  
Z22181-15|CAA80191.1|  810|Caenorhabditis elegans Hypothetical p...    29   4.0  
Z22181-14|CAI46590.1|  516|Caenorhabditis elegans Hypothetical p...    29   4.0  
U80443-7|AAB37678.2|  393|Caenorhabditis elegans Coenzyme q (ubi...    29   4.0  
AF326940-1|AAG49390.1|  810|Caenorhabditis elegans replication l...    29   4.0  
AF068713-9|AAC17800.1|  284|Caenorhabditis elegans Serpentine re...    29   4.0  
AC025721-13|AAR85897.1|  139|Caenorhabditis elegans Hypothetical...    29   5.2  
Z81050-12|CAN86586.1|  420|Caenorhabditis elegans Hypothetical p...    28   6.9  
Z81050-11|CAN86585.1|  399|Caenorhabditis elegans Hypothetical p...    28   6.9  
AL032618-1|CAB63366.1| 1045|Caenorhabditis elegans Hypothetical ...    28   6.9  

>Z81106-1|CAB03221.2|  352|Caenorhabditis elegans Hypothetical
           protein R06C1.2 protein.
          Length = 352

 Score =  148 bits (358), Expect = 5e-36
 Identities = 84/237 (35%), Positives = 131/237 (55%), Gaps = 7/237 (2%)
 Frame = -3

Query: 807 DIMDGSSVRRGMPCWYRRPEVGITCAFXDSLLIHSSLFEFXKTNFRTNPNYMKMFELFNE 628
           DIMD S  RRG PCW+RR  VG++ A  D+ ++ S + +  +     + N  ++ E + +
Sbjct: 100 DIMDNSETRRGKPCWFRREGVGMS-AINDAFIMDSFVEDILRLALPGHVNLDRLCEAYRK 158

Query: 627 TLWRTSMGQHLDHVTGNRKTDYSSFTLDRXXXXXXXXXXXXXYNLPVSLGLLLAENVDEK 448
           +  +T +GQ LD  + N+    SSFT DR                P+ + L++++ +   
Sbjct: 159 SKQKTLIGQFLDTSSVNQ---ISSFTWDRYELMVENKTSHYTVFHPIQMALIISDVL--A 213

Query: 447 IYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCTWLAVQALQRCTEAQR 268
            + S + +  +IG +FQ QDDF+D +GD   TGK+GTDIQ+ KCTWLAV+ALQ+  +   
Sbjct: 214 YHGSVKKVAYQIGFLFQSQDDFLDVYGDPKITGKIGTDIQDGKCTWLAVRALQKMHKTPE 273

Query: 267 -------TVFKACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENIP 118
                    FK  +GS +P  VE+IKR+Y++L L Q ++  EK     I + I  IP
Sbjct: 274 KWGAKLIEEFKTSFGSVDPEKVEKIKRIYDELQLKQEFRRFEKHFSGEIKKSISEIP 330


>Z29095-13|CAA82357.1|  810|Caenorhabditis elegans Hypothetical
           protein ZK632.1a protein.
          Length = 810

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 19/49 (38%), Positives = 28/49 (57%)
 Frame = -1

Query: 392 RTIS*TASVMK*KLVKLVQIYKSANVLGWQFKRCSAVLKHNVQYSKPVM 246
           +TIS T + +K  L     I  +AN +  ++ R S  LK+NVQ S P+M
Sbjct: 481 QTISITKAGVKATLNARASILAAANPVNGRYDR-SRPLKYNVQMSAPIM 528


>Z22181-15|CAA80191.1|  810|Caenorhabditis elegans Hypothetical
           protein ZK632.1a protein.
          Length = 810

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 19/49 (38%), Positives = 28/49 (57%)
 Frame = -1

Query: 392 RTIS*TASVMK*KLVKLVQIYKSANVLGWQFKRCSAVLKHNVQYSKPVM 246
           +TIS T + +K  L     I  +AN +  ++ R S  LK+NVQ S P+M
Sbjct: 481 QTISITKAGVKATLNARASILAAANPVNGRYDR-SRPLKYNVQMSAPIM 528


>Z22181-14|CAI46590.1|  516|Caenorhabditis elegans Hypothetical
           protein ZK632.1b protein.
          Length = 516

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 19/49 (38%), Positives = 28/49 (57%)
 Frame = -1

Query: 392 RTIS*TASVMK*KLVKLVQIYKSANVLGWQFKRCSAVLKHNVQYSKPVM 246
           +TIS T + +K  L     I  +AN +  ++ R S  LK+NVQ S P+M
Sbjct: 187 QTISITKAGVKATLNARASILAAANPVNGRYDR-SRPLKYNVQMSAPIM 234


>U80443-7|AAB37678.2|  393|Caenorhabditis elegans Coenzyme q
           (ubiquinone) biosynthesisprotein 1 protein.
          Length = 393

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -3

Query: 474 LLAENVDEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGK-VGTDIQ 328
           +LA+  D K+++ A +    +G  FQ+ DD +D      + GK V  D++
Sbjct: 256 ILADGSDLKLHEIAFEYGRNLGIAFQLADDLLDFIATADEMGKPVAADLK 305


>AF326940-1|AAG49390.1|  810|Caenorhabditis elegans replication
           licensing factor MCM2/3/5-type protein protein.
          Length = 810

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 19/49 (38%), Positives = 28/49 (57%)
 Frame = -1

Query: 392 RTIS*TASVMK*KLVKLVQIYKSANVLGWQFKRCSAVLKHNVQYSKPVM 246
           +TIS T + +K  L     I  +AN +  ++ R S  LK+NVQ S P+M
Sbjct: 481 QTISITKAGVKATLNARASILAAANPVNGRYDR-SRPLKYNVQMSAPIM 528


>AF068713-9|AAC17800.1|  284|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 68 protein.
          Length = 284

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 1/98 (1%)
 Frame = +1

Query: 55  LMLPIVRNIQQLFKENAGGLYW-YIFNLSYNIVVHRFFLMLVYLREVKVFVKSFYAFHMC 231
           L+L I  + +  FK      Y  +  ++ Y+I +  F L ++ +   ++F    + F   
Sbjct: 26  LLLAIFCSKRVTFKSELSLFYTRFAADIGYSISISNFKLYILAVMISEIFAVKNFIFITL 85

Query: 232 WFTATITGFEYCTLCFSTALQRLNCQPSTFALLYICTN 345
           W T  I G    +L F T L R+    S F   + C N
Sbjct: 86  WLT-IIFGIIRTSLLFLTTLDRV---ISLFFPFFYCAN 119


>AC025721-13|AAR85897.1|  139|Caenorhabditis elegans Hypothetical
           protein Y48G8AL.15 protein.
          Length = 139

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -3

Query: 183 QIY-KHQEKAMYDNIIRQIENIPIEAARV 100
           Q+Y +HQ K  YD ++R I + P+ A RV
Sbjct: 56  QLYAQHQGKFFYDRLVRHISSGPVIAMRV 84


>Z81050-12|CAN86586.1|  420|Caenorhabditis elegans Hypothetical
           protein C50B6.14b protein.
          Length = 420

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -3

Query: 225 VERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENI 121
           +ER +R+ +DLHL  I     K   DNI++ IE++
Sbjct: 383 LERQQRMQKDLHLLYIAPLVAKTPKDNIVQIIEDV 417


>Z81050-11|CAN86585.1|  399|Caenorhabditis elegans Hypothetical
           protein C50B6.14a protein.
          Length = 399

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -3

Query: 225 VERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENI 121
           +ER +R+ +DLHL  I     K   DNI++ IE++
Sbjct: 362 LERQQRMQKDLHLLYIAPLVAKTPKDNIVQIIEDV 396


>AL032618-1|CAB63366.1| 1045|Caenorhabditis elegans Hypothetical
           protein Y42A5A.1 protein.
          Length = 1045

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +1

Query: 64  PIVRNIQQLFKENAGGLYWYIFNLSYNIVVHRFFLMLVYLREVKVFV 204
           PI  N  +L       LY +I N ++ + + +  + L+Y  E+K+FV
Sbjct: 124 PIFTNSTELITTTEDPLYVHINNTNHRLQIPQIHIPLLYEVELKLFV 170


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,563,539
Number of Sequences: 27780
Number of extensions: 384403
Number of successful extensions: 1053
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)