Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_C20
(663 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.06 |brx1||ribosome biogenesis protein Brx1|Schizosacchar... 166 2e-42
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce... 31 0.20
SPBC29A3.08 |pof4||elongin-A, F-box protein Pof4|Schizosaccharom... 30 0.26
SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit... 27 2.4
SPBC16H5.15 |||conserved fungal protein|Schizosaccharomyces pomb... 27 3.2
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual 26 4.2
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 26 4.2
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 26 5.6
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc... 25 7.4
SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces pombe... 25 7.4
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom... 25 9.7
SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|... 25 9.7
>SPBC800.06 |brx1||ribosome biogenesis protein
Brx1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 166 bits (404), Expect = 2e-42
Identities = 81/169 (47%), Positives = 108/169 (63%), Gaps = 6/169 (3%)
Frame = -1
Query: 663 KMRDLYMWIXNIPNGPSAKFLVENIYTMGELXMTGNCLRGSRPLLSFDPQFTKDPHYCLL 484
+ DLY+ I PNGP+ KF VEN++TM EL MTGN L+GSRP+LSFD F PH ++
Sbjct: 105 RREDLYLHIARAPNGPTVKFHVENLHTMDELNMTGNALKGSRPILSFDKTFDTAPHLKVV 164
Query: 483 KELLVQIFGVPNYHPKSQPFFDHVYTFMVLDNRIWFRNYQIL-SEDGA-----LAEIGPR 322
KELL Q FG+P +S+PF D V T + D +IWFRNY+I +ED + L EIGPR
Sbjct: 165 KELLQQTFGIPKGARRSKPFIDRVCTLTIADGKIWFRNYEIRENEDKSKDPVTLIEIGPR 224
Query: 321 FVLNPVKIFSGSFGGATLWENPKYISPAKLRQAYSRKAGNKYENRIEKK 175
FV+ + I GSFGG +++N ++S +R A +A +Y NR E K
Sbjct: 225 FVMTIINILEGSFGGPVIYKNDTFVSSTMVRAAIRNQAAQRYVNRQESK 273
>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 30.7 bits (66), Expect = 0.20
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -1
Query: 342 LAEIGPRFVLNPVKIFSGSFGGATLWENPKYISPAKLRQ 226
L EIGPR L +KI + GG L+ + + S +++Q
Sbjct: 289 LIEIGPRMTLELIKITEDAMGGKVLYHSHVHKSKEEIKQ 327
>SPBC29A3.08 |pof4||elongin-A, F-box protein
Pof4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 199
Score = 30.3 bits (65), Expect = 0.26
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -1
Query: 336 EIGPRFVLNPVKIFSGSFGGATLWENPKY-ISPAKLRQAYSRKAGNKYENRI 184
E+ R +LN + + G +G N Y ++ AKLR AY++ +K RI
Sbjct: 71 ELQKRTILNNIDDWRGLYGKLKKKRNAHYNVASAKLRSAYTKLEQSKQNKRI 122
>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 537
Score = 27.1 bits (57), Expect = 2.4
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Frame = +2
Query: 143 PVSGFVASYKAFFSILFSYLLPAF--LE*ACLSLAGLMYLGFSHNVAPPNDPENILTGFN 316
P+ F K + +L + P + ++ A L+L ++ + V PPN+P + N
Sbjct: 222 PLKIFKRLQKNYVRMLIPFHYPTYQRIQSAVLTLVDVLVSKYELKVPPPNEPLILFELIN 281
Query: 317 TNRGPISAKAPSSDRI**FLNQILLSNT 400
+ P+ P+S + +QI L T
Sbjct: 282 SFFFPLEIFIPASRLLNLVHSQISLQGT 309
>SPBC16H5.15 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 166
Score = 26.6 bits (56), Expect = 3.2
Identities = 13/51 (25%), Positives = 23/51 (45%)
Frame = -1
Query: 453 PNYHPKSQPFFDHVYTFMVLDNRIWFRNYQILSEDGALAEIGPRFVLNPVK 301
P +PK+ + + N+ + Y+IL E+ L I +F P+K
Sbjct: 107 PETNPKTPISLKELKDIEIYQNQFHYSAYEILEEEKILDNIFRKFTALPIK 157
>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
Length = 629
Score = 26.2 bits (55), Expect = 4.2
Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Frame = -1
Query: 321 FVLNPVKIFSGSFGGATLWENPKYISPAKLRQAYSR-KAGNKYENRIEKKALYEATKPET 145
F L KI W+N +ISP K Q +S+ K + YE E + E
Sbjct: 146 FALEAPKILKRDAMFKESWKNKCFISPQKDNQGFSKSKHLSTYEGETENGFSTSTEEEEE 205
Query: 144 GYPDIEGADF 115
DI A +
Sbjct: 206 EEEDIVSASW 215
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 257 GFSHNVAPPNDPENILTGFNTNRGPISAKAP 349
G S N +P N+P+N+ G + P+S + P
Sbjct: 361 GRSANQSPRNNPQNVNNGSTPIQIPVSLQTP 391
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1328
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 564 TGNCLRGSRPLLSFDPQFTKDPHYCLLKE 478
T +CL G L + DPH+CLL+E
Sbjct: 197 TRHCLYGLDADLIMLGLLSHDPHFCLLRE 225
>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1141
Score = 25.4 bits (53), Expect = 7.4
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Frame = -1
Query: 642 WIXNIPNGPSAKFLVENIY-TMGELXMTGNCLRGSRPLLSFDPQFTKDPHYC-LLKELLV 469
++ I + P N+Y EL + N R ++ DP +P L + L+
Sbjct: 243 YVPTIADAPLTDEQKLNLYLARNELIVLANHFRDTKE----DPAIVANPFPVRLARPALI 298
Query: 468 QIFGVPNY 445
FGVPNY
Sbjct: 299 NAFGVPNY 306
>SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 306
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 639 IXNIPNGPSAKFLVENIYTMGELXMTG 559
+ ++PNGPS F + N+ T E+ G
Sbjct: 163 LVHLPNGPSFYFTLSNLQTAKEISNHG 189
>SPBC3B9.09 |vps36||RBZ zinc finger protein
Vps36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 467
Score = 25.0 bits (52), Expect = 9.7
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = -1
Query: 297 FSGSFGGATLWENPKYISPAKLRQAYSRKAGNKYENRIEKKALYEATKPETGYPDIE 127
F GS G + +E K + +Q YS NKY+ ++ +KA+ E + G D+E
Sbjct: 175 FRGS-GSSKFYEAIKSETDEIEKQRYS----NKYDTKVLRKAILEKSLRMGGIHDLE 226
>SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 381
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = -1
Query: 345 ALAEIGPRFVLNPVKIFSGSFGGATLWENPKYISPAKLRQAYSRKAGNKYENR 187
++ + + V+IF G+TL +N K ++ Y K +KY+N+
Sbjct: 48 SMLHLSKGLTVKDVRIFFHDSIGSTLLKNRKKLNSENELPNYGEKFTHKYDNQ 100
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,871,299
Number of Sequences: 5004
Number of extensions: 64628
Number of successful extensions: 174
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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