Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_C20
(663 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0434 - 22904790-22904927,22905220-22905318,22905404-229054... 169 1e-42
01_01_0325 + 2631637-2631882,2632715-2632788,2632874-2633006,263... 35 0.066
12_02_1278 + 27501180-27501190,27502661-27502675,27503299-275034... 28 7.6
09_04_0226 - 15859439-15860377 28 7.6
08_02_1379 - 26540012-26540587,26540804-26540995,26541777-265418... 28 7.6
08_01_0360 - 3160723-3160821,3160911-3160995,3161099-3161205,316... 28 7.6
01_01_0433 + 3282195-3285185 28 7.6
>02_04_0434 -
22904790-22904927,22905220-22905318,22905404-22905472,
22905582-22905683,22905750-22905824,22906293-22906417,
22906511-22906589,22906933-22907074,22907200-22907441
Length = 356
Score = 169 bits (412), Expect = 1e-42
Identities = 91/224 (40%), Positives = 126/224 (56%), Gaps = 38/224 (16%)
Frame = -1
Query: 663 KMRDLYMWIXNIPNGPSAKFLVENIYTMGELXMTGNCLRGSRPLLSFDPQFTKDPHYCLL 484
K +DLY+W+ P GPS KFLV ++TM EL +TGN L+GSRPL++F F + PH+ L+
Sbjct: 131 KQKDLYLWMVKSPGGPSVKFLVNAVHTMEELKLTGNHLKGSRPLITFSTNFDEQPHWQLV 190
Query: 483 KELLVQ-------------------------IFGVPNYHPKSQPFFDHVYTFMVLDNRIW 379
KE+L Q IF P H K++PF DHV+ F ++D+ +W
Sbjct: 191 KEMLTQLSHVMNFMENWGNAIRDEVIHASFLIFATPKDHRKAKPFHDHVFVFSIVDDHVW 250
Query: 378 FRNYQI---------LSEDG----ALAEIGPRFVLNPVKIFSGSFGGATLWENPKYISPA 238
FRNYQI + + G L E+GPRF LNP+KIF GSFGG TL+ENP Y+SP
Sbjct: 251 FRNYQISVPHNEIDKVDKGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPN 310
Query: 237 KLRQAYSRKAGNKYENRIEKKALYEATKPETGYPDIEGADFFKG 106
++R RK KY +++ K + + E E A+ +KG
Sbjct: 311 QIRALEKRKKAGKYAKKVKAKVRRKMHEMENTLEPDEFAELWKG 354
>01_01_0325 +
2631637-2631882,2632715-2632788,2632874-2633006,
2633091-2633172,2633471-2633580,2633659-2633751,
2633854-2633904,2634013-2634105,2635257-2636129,
2636204-2636316,2636436-2636448
Length = 626
Score = 34.7 bits (76), Expect = 0.066
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Frame = -1
Query: 543 SRPLLSFDPQFTKDPHYCLLKELLVQIFGVPNYHPKSQPFFDHVYTFMVLDNRIWFRNYQ 364
+ PLLSF F +D + L+KE+L+ +F ++ +Y F + ++FR ++
Sbjct: 190 TNPLLSFSSNFVEDETWALVKEMLMMMFSPVQEDERAA---SDLYVFTKSRDSVYFRIFK 246
Query: 363 IL------SEDG-ALAEIGPRFVLNPVKIFSGSFGGA 274
I SE+ L E+G F L + + G+F G+
Sbjct: 247 ITSIPAGESENSLVLDEVGLNFCLKLLDV-HGAFVGS 282
>12_02_1278 +
27501180-27501190,27502661-27502675,27503299-27503410,
27504340-27504439,27504579-27504641,27505208-27505318,
27505405-27505589,27506002-27506140,27506374-27506491,
27506568-27506669,27506904-27507158,27507315-27507426,
27507588-27507614
Length = 449
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = -1
Query: 444 HPKSQPFFDHVYTFMVLDNRIWFRNYQILSEDGALAEIGP 325
HPK PF D ++ F + + Y+++++DGA+ + P
Sbjct: 130 HPKVDPFTDEMFAF-GYSHEPPYCTYRVITKDGAMLDPVP 168
>09_04_0226 - 15859439-15860377
Length = 312
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Frame = -1
Query: 465 IFGVPNYHPKSQPFF-DHVYTFMVLDNRIWFRNYQILSEDGALAEIGP 325
++ P HP S F D + + DNR W R Q + AL P
Sbjct: 263 MYNFPGRHPCSHEFIPDTIAVHQLKDNRRWARTLQYFNFTAALKPFYP 310
>08_02_1379 -
26540012-26540587,26540804-26540995,26541777-26541812,
26542255-26542488
Length = 345
Score = 27.9 bits (59), Expect = 7.6
Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Frame = -1
Query: 522 DPQFTKDPHYCLLKELLVQIFG---VPNYHPKSQPFFDHVYTFMVLDNRIWFRNYQILSE 352
DP KD + L E + G N P S FD+VY +++ F + Q+L
Sbjct: 236 DPSMNKD-YAAQLMEACPRDVGKTIAVNMDPVSPIVFDNVYYSNLVNGLGLFTSDQVLYT 294
Query: 351 DGALAEIGPRFVLNPVKIF 295
DGA F +N F
Sbjct: 295 DGASRRTVEEFAVNQTAFF 313
>08_01_0360 -
3160723-3160821,3160911-3160995,3161099-3161205,
3163066-3163155,3163265-3163408,3163572-3163622,
3163735-3163844,3163928-3164123
Length = 293
Score = 27.9 bits (59), Expect = 7.6
Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 4/122 (3%)
Frame = -1
Query: 639 IXNIPNGPSAKFLVENIYTMGELXMTGNCLRGSRPLLSFDPQFTKDPHYCLLKELLVQIF 460
+ ++P GP+A F + N+ T ++ + + P D E I
Sbjct: 151 VCHLPFGPTAYFGLLNVVTRHDIKDR----KAMGKMSEAYPHLILDNFTTKTGERTANI- 205
Query: 459 GVPNYHPKSQPFFDHVYTFMVLDNRIWFRNYQILSEDGA----LAEIGPRFVLNPVKIFS 292
V + P +P + TF D+ I FR++ G L E+GPRF L +I
Sbjct: 206 -VKHLFPVPKPDSKRIITFANRDDYISFRHHVYEKHGGPKSLDLKEVGPRFELRLYQIKR 264
Query: 291 GS 286
G+
Sbjct: 265 GT 266
>01_01_0433 + 3282195-3285185
Length = 996
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -1
Query: 633 NIPNGPSAKFLVENIYTMGELXMTGNCLRGSRP 535
NI NG L+EN T+ L + GN LRG P
Sbjct: 644 NILNGSIPSCLMENSSTLKILNLRGNELRGELP 676
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,277,960
Number of Sequences: 37544
Number of extensions: 364676
Number of successful extensions: 751
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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