Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_C20
         (663 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14331-4|AAA28097.1|  352|Caenorhabditis elegans Hypothetical pr...   188   3e-48

>L14331-4|AAA28097.1|  352|Caenorhabditis elegans Hypothetical
           protein K12H4.3 protein.
          Length = 352

 Score =  188 bits (458), Expect = 3e-48
 Identities = 83/165 (50%), Positives = 117/165 (70%), Gaps = 1/165 (0%)
 Frame = -1

Query: 663 KMRDLYMWIXNIPNGPSAKFLVENIYTMGELXMTGNCLRGSRPLLSFDPQFTKDPHYCLL 484
           K +D Y+W+ N+  GPS KFLV N++TM EL M+GNCLR SRP+LSFD  F K P   L+
Sbjct: 125 KRKDTYLWMSNVEKGPSIKFLVHNVHTMKELKMSGNCLRASRPVLSFDDAFDKKPQLKLI 184

Query: 483 KELLVQIFGVPNYHPKSQPFFDHVYTFMVLD-NRIWFRNYQILSEDGALAEIGPRFVLNP 307
           K +L+Q  G P++HP+SQPF DHV+ F V + ++IWFRN+QI+ E   L E+GPRFVL  
Sbjct: 185 KAVLMQTLGTPHHHPRSQPFVDHVFNFSVGEGDKIWFRNFQIVDESLQLQEVGPRFVLEM 244

Query: 306 VKIFSGSFGGATLWENPKYISPAKLRQAYSRKAGNKYENRIEKKA 172
           V++F+GSF GA L++NP Y+SP  +R+ + +   +  E ++  KA
Sbjct: 245 VRLFAGSFEGAVLYDNPNYVSPNVIRREHRKGQHSYIEKQLAVKA 289


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,488,608
Number of Sequences: 27780
Number of extensions: 347442
Number of successful extensions: 847
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)