Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_C20
         (663 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   2.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.4  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   4.5  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   4.5  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   7.9  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   7.9  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   7.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.9  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   7.9  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 549 RGSRPLLSFDPQFTKDPHYCLLKE 478
           R  RP  +F+P+ T   HY   KE
Sbjct: 158 RYKRPRTTFEPRATDSRHYDRYKE 181


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/29 (24%), Positives = 16/29 (55%)
 Frame = +2

Query: 278  PPNDPENILTGFNTNRGPISAKAPSSDRI 364
            PP+ P  ++T +       +A+ P+S ++
Sbjct: 1202 PPSQPNGVITQYTVYTKADNAEEPTSQKV 1230


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +1

Query: 559 ASHXQFPHSINVFHQKFSTWS 621
           A H + P++   FH K   W+
Sbjct: 788 AGHVRLPYTFEQFHNKELLWT 808


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +1

Query: 559 ASHXQFPHSINVFHQKFSTWS 621
           A H + P++   FH K   W+
Sbjct: 826 AGHVRLPYTFEQFHNKELLWT 846


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +1

Query: 370 ISEPNSVI*YHKGIHMIEKWLTFWMIIRYTKNLY 471
           I  PN ++ Y K + +    L    I+RY + L+
Sbjct: 301 IQMPNLMVFYEKSLALAAFSLMLTSILRYLQELH 334


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -2

Query: 479 NYWYKFLVYLIIIQKVNHFSI 417
           N W+  L + I+ Q   H+S+
Sbjct: 4   NIWWLILYFSIVCQAKAHYSL 24


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -1

Query: 282 GGATLWENPK 253
           GG  LW+NP+
Sbjct: 350 GGPVLWQNPR 359


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -1

Query: 447 YHPKSQPFFDHVYTFMV 397
           YHP+  PF   +Y  ++
Sbjct: 347 YHPEDLPFIKDIYETVI 363


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -1

Query: 447 YHPKSQPFFDHVYTFMV 397
           YHP+  PF   +Y  ++
Sbjct: 53  YHPEDLPFIKDIYETVI 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,479
Number of Sequences: 438
Number of extensions: 4281
Number of successful extensions: 17
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)