Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_C19
         (730 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0703 - 19614057-19614264,19615305-19615407,19615880-196159...    28   6.6  
08_02_1257 - 25646029-25646054,25646139-25646236,25646609-256467...    28   8.7  

>09_04_0703 -
           19614057-19614264,19615305-19615407,19615880-19615973,
           19616216-19616229,19616384-19616595,19617653-19617940,
           19618275-19618362,19618444-19618515,19618597-19618672,
           19618755-19618813,19618953-19619016,19619253-19619402
          Length = 475

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = -3

Query: 233 ETFFFS*YMPKNNNAAKLFDVYXIXF*RFFLXKYDAXVWLVHFGLDWSRGLPDG 72
           +TF    YMP  +NA    D Y   +       YD  +    F + W R +PDG
Sbjct: 66  DTFINQGYMPDGSNADVSADQYH-HYKEDVKLMYDMGLDAYRFSIAWPRLIPDG 118


>08_02_1257 -
           25646029-25646054,25646139-25646236,25646609-25646700,
           25646786-25646893,25647212-25647346,25647648-25647752,
           25647951-25648088,25648865-25648963,25649079-25649195,
           25649446-25649610,25649955-25650014,25650395-25650559,
           25650636-25650746,25651220-25651333,25651466-25651531,
           25651857-25651994,25652303-25652386,25652468-25652510,
           25652621-25652676,25652772-25652880,25652944-25653026,
           25653127-25653210,25653383-25653454,25653557-25653634,
           25653717-25653800,25653892-25653962,25654095-25654164,
           25654314-25654403,25654500-25654661,25654702-25654817,
           25654946-25654988,25655069-25655185,25655897-25656046
          Length = 1082

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = -1

Query: 682 YVGKDIFLMHFYRL--NAIYD*YSETFFFHNTFLKTIIESSIIKGGNRCIWTIFFIDMSI 509
           Y G  IFL  F  +   AI D      F H    K  I+  +++GG RC  +IF + +  
Sbjct: 233 YDGGSIFLAVFLVILVTAISDYRQSLQFRHLNEEKQNIQVEVVRGGKRCGTSIFDLVVGD 292

Query: 508 QIDLNI 491
            + L I
Sbjct: 293 VVPLKI 298


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,122,100
Number of Sequences: 37544
Number of extensions: 283257
Number of successful extensions: 484
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)