Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_C19
         (730 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032657-16|CAJ85780.1|  318|Caenorhabditis elegans Hypothetical...    35   0.052
AL032657-15|CAA21734.1|  788|Caenorhabditis elegans Hypothetical...    35   0.052
AC084197-8|AAG23476.1|  228|Caenorhabditis elegans Hypothetical ...    34   0.091
U40415-6|AAP68933.1|  329|Caenorhabditis elegans Homolog of yeas...    30   1.9  

>AL032657-16|CAJ85780.1|  318|Caenorhabditis elegans Hypothetical
           protein Y47H9C.5b protein.
          Length = 318

 Score = 35.1 bits (77), Expect = 0.052
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +2

Query: 230 FHYINHRWRSIKNISLPTYQILESTIIKAGRQCDF-WTIIGKSEK*IIDFVFHW 388
           + Y NH WR+  +I    Y  L + ++  G   DF  T++  SE  I+DF   W
Sbjct: 177 YDYPNHMWRNSDSIQRWVYNFLPTEVVSLGN--DFHTTVLDSSEPWIVDFFAPW 228


>AL032657-15|CAA21734.1|  788|Caenorhabditis elegans Hypothetical
           protein Y47H9C.5a protein.
          Length = 788

 Score = 35.1 bits (77), Expect = 0.052
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +2

Query: 230 FHYINHRWRSIKNISLPTYQILESTIIKAGRQCDF-WTIIGKSEK*IIDFVFHW 388
           + Y NH WR+  +I    Y  L + ++  G   DF  T++  SE  I+DF   W
Sbjct: 647 YDYPNHMWRNSDSIQRWVYNFLPTEVVSLGN--DFHTTVLDSSEPWIVDFFAPW 698


>AC084197-8|AAG23476.1|  228|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.12 protein.
          Length = 228

 Score = 34.3 bits (75), Expect = 0.091
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +2

Query: 236 YINHRWRSIKNISLPTYQILESTIIKAGRQCDF-WTIIGKSEK*IIDFVFHW 388
           Y NH WR+  +I    Y  L + ++  G   DF  T++  SE  I+DF   W
Sbjct: 89  YPNHMWRNSDSIQRWVYNFLPTEVVSLGN--DFHTTVLDSSEPWIVDFFAPW 138


>U40415-6|AAP68933.1|  329|Caenorhabditis elegans Homolog of yeast
           longevity geneprotein 2 protein.
          Length = 329

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/66 (25%), Positives = 33/66 (50%)
 Frame = +2

Query: 476 FEGDDYIQINLY*HINKKNCPNAPIATFDNRRLNYCF*ECIMKKKSFTISIIDGVQPIKM 655
           F  ++YI + L   +++KN P     T D  +      EC M+   +TIS + G+  + +
Sbjct: 52  FVFENYIFVPLAHFLSRKNPPETRRGTLDREKKYSRMAECAMRALYYTISFVCGLY-LVL 110

Query: 656 H*KYIF 673
           H  +++
Sbjct: 111 HESHLY 116


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,315,800
Number of Sequences: 27780
Number of extensions: 300323
Number of successful extensions: 542
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)