Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_C18
         (712 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0906 - 7124686-7124730,7124854-7124925,7125257-7125383,712...   165   4e-41
05_03_0041 - 7662094-7662138,7662269-7662340,7663144-7663179,766...   153   1e-37
12_02_0748 - 22749911-22750135,22752142-22752358,22753177-22753337     28   6.4  
04_03_0776 - 19463473-19464252,19464354-19464849,19465460-19465911     28   8.4  
02_01_0524 + 3798019-3798265,3798419-3798651,3798765-3799014,379...    28   8.4  

>01_01_0906 -
           7124686-7124730,7124854-7124925,7125257-7125383,
           7125424-7125572,7126126-7126465,7126759-7127090,
           7127327-7127860
          Length = 532

 Score =  165 bits (400), Expect = 4e-41
 Identities = 92/225 (40%), Positives = 144/225 (64%), Gaps = 9/225 (4%)
 Frame = -1

Query: 709 QXDQINKQTEQMYHLLAICLVLHPQ--CVDESIQQVLREKNYHEKMFKMQYGD---LGEF 545
           Q DQI K+ EQMY  LA+CL L PQ   +DE++   L+EK Y++KM KMQ  D      +
Sbjct: 316 QYDQILKKNEQMYAFLAVCLSLCPQHNLIDENVSTQLKEK-YNDKMTKMQRFDEETYAAY 374

Query: 544 ESCFTFACPKFLSACPPPIE-PGANYGRDAVKHQTQVFMDEVRQQKMLPTIRSYLKLYTT 368
           +  F++ACPKF++  PP ++ P  NY +DA + Q ++F+ EV+QQ++L  IRSYLKLY+T
Sbjct: 375 DELFSYACPKFITPSPPALDQPLTNYNQDAYRLQLKLFLYEVKQQQLLSGIRSYLKLYST 434

Query: 367 LPMAKLAAFMSAARGSERDAAREHAALAIH---LLCFKHKMKNVVWTKGPSGLDGKFQSG 197
           + +AKLA +M     + R  A ++ +  ++   L+ +KHKM  V         +GK  S 
Sbjct: 435 ITIAKLAQYMEVDEATLR--AMKNLSQYLYRSILMTYKHKMHAV-------DNNGKIVSS 485

Query: 196 SELDFYIDNDMIHIADTKVAHRYGDFFIRKLLKFEELNRKLHHIK 62
           ++ DFYI  D+IH+ ++K   R+GD+F+R++LKFEE+  +L  ++
Sbjct: 486 ADFDFYIKEDVIHVMESKPIKRHGDYFLRQILKFEEMIGELEKVQ 530


>05_03_0041 -
           7662094-7662138,7662269-7662340,7663144-7663179,
           7663356-7663449,7663533-7663681,7664525-7664864,
           7666417-7666748,7667348-7667821
          Length = 513

 Score =  153 bits (372), Expect = 1e-37
 Identities = 93/234 (39%), Positives = 141/234 (60%), Gaps = 18/234 (7%)
 Frame = -1

Query: 709 QXDQINKQTEQMYHLLAICLVLHPQ--CVDESIQQVLREKNYHEKMFKM-QYGD--LGEF 545
           Q DQ+ K+ EQMY LLAICL L PQ   +DE++   L+EK Y +KM KM +Y D     +
Sbjct: 296 QYDQLLKKNEQMYALLAICLSLCPQDKLIDENVGTQLKEK-YGDKMTKMHRYDDEAYAIY 354

Query: 544 ESCFTFACPKFLSACPPPI-EPGANYGRDAVKHQTQVFMDEVRQQKMLPTIRSYLKLYTT 368
           +  F++ACPKF++A PP + EP  NY +DA + Q ++F+ EV+QQ++L  IRSYLKLY+T
Sbjct: 355 DELFSYACPKFITASPPVLREPYTNYNQDAYRLQLKLFLYEVKQQQLLSGIRSYLKLYST 414

Query: 367 LPMAKLAAFMSAARGSERDAAREHAALAIHLLCFKHKMKNVVWTKGPSGLDGKFQSGSEL 188
           + + KLA +M            +   L   L+ +KHKM ++         DGK  S ++ 
Sbjct: 415 ITIGKLAKYMDV----------DEVTLRTILMTYKHKMHSI-------DSDGKVISSADF 457

Query: 187 DFYID------------NDMIHIADTKVAHRYGDFFIRKLLKFEELNRKLHHIK 62
           DFYID             D+IH+ ++K+   +GD+F+R++LKFEE+  +L  ++
Sbjct: 458 DFYIDECMQQPLVWFPAEDIIHVVESKLTKNHGDYFLRQILKFEEMITQLDKVQ 511


>12_02_0748 - 22749911-22750135,22752142-22752358,22753177-22753337
          Length = 200

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = -1

Query: 352 LAAFMSAARGSERDAAREHAALAIHLLCFKHKMKNVVW 239
           LA F   A G+        AA A+HLLCF       VW
Sbjct: 6   LAVFFLLAGGAGLGMTAAAAAKAVHLLCFATSWGVTVW 43


>04_03_0776 - 19463473-19464252,19464354-19464849,19465460-19465911
          Length = 575

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = -2

Query: 684 PSKCTIYWPFVWSCIRSALMNPSSRCFEKRTTMRRCLKCNMET*VNSRAALLSRAPN 514
           P  CT      ++CI+  +   S      R+   R L+ N    V++ A +L R PN
Sbjct: 175 PDSCTSLVSLNFACIKGEVNAGSLERLVSRSPNLRSLRLNRSVSVDTLAKILLRTPN 231


>02_01_0524 +
           3798019-3798265,3798419-3798651,3798765-3799014,
           3799104-3799249,3799372-3799577,3799721-3799845,
           3800154-3800734
          Length = 595

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -1

Query: 472 YGRDAVKHQTQVFMDEVRQQKMLPTIRSYLKL 377
           YGR  +    +   +E++Q+ M PT++S++ L
Sbjct: 395 YGRAGLHEDAEAVFEELKQRGMSPTMKSHMLL 426


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,793,086
Number of Sequences: 37544
Number of extensions: 486781
Number of successful extensions: 1252
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1244
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)