Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_C13
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein glycotr...   111   1e-25
SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb...    27   2.3  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    26   4.1  
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po...    25   7.2  
SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|c...    25   9.5  
SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   9.5  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    25   9.5  

>SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein
           glycotransferase subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score =  111 bits (266), Expect = 1e-25
 Identities = 61/180 (33%), Positives = 94/180 (52%), Gaps = 8/180 (4%)
 Frame = -1

Query: 582 NKILAIRLTEWVFGERGRLRVRNVDHHRQGEKEPS---SAYTITDTVVYRIEIEELKNGK 412
           N + A  LT WVF  +G L+  N+ + +  E   S   S Y I D +++ I+I  L++G+
Sbjct: 253 NFLFARDLTNWVFQRKGVLQATNMTYGKVAEPLESRNASCYRIKDEMIFSIDISLLEDGQ 312

Query: 411 WQPFEANDVQLEFVRIDPFIRTTLQKKPNGV-----YEAVFKVPDVWGVYQFKVDYDRVG 247
             P+ A+DVQLE + +DP+ R  L   P+       YEAV   PD +G + FK++Y R G
Sbjct: 313 QTPYVADDVQLELIMLDPYYRVNLVPVPSDSQTSQHYEAVLVAPDHYGDFTFKIEYKRPG 372

Query: 246 YTRLYHSTQVSVRPLQHTQYERFIPSAYPYYVXXXXXMIGVCLFXFVXLYYKEXQPKTKS 67
            T +   +  ++R   H ++ RF+P AYPYY      +    LF  + L  K  +P   S
Sbjct: 373 LTPIEEKSTFTLRQFFHNEFPRFLPHAYPYYASCFSVLGAFLLFCGIWLLQKPAKPVVPS 432


>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -1

Query: 357 FIRTTLQKKPNGVYEAVFKVPDVWGVYQFKVDYDRVGYTRLYHSTQVSVR 208
           F+  T+ ++P G +EA+  +     + +F   YD   Y  +Y S  V  R
Sbjct: 426 FLSVTIPERP-GSFEALHNIITPRSITEFSYRYDNDDYANIYTSFVVKDR 474


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = -2

Query: 605 KQSQMYQATRFSRFALLNGCLVSVGVYACAMSTITDKERRN--RPVPIPLQTLLYTELK 435
           K  ++Y    F + AL+  C V  G     M+ + D  + N   P+P+P   +  T+ K
Sbjct: 536 KLLELYSQEVFDKNALVERCYVFFGSNEHLMNWLKDLVKYNPANPIPVPRPRVDLTQCK 594


>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 296

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = -1

Query: 621 KVHGDKTKSDVSGNKILAIRLTEWVFGERGRLRVRNVDHHRQG 493
           K+  D  K D +   +L I LT W     GRL V N  H R G
Sbjct: 184 KIRVDWEKEDAA--VLLGIALTGWSEQVPGRLYVCNYCHRRLG 224


>SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = +2

Query: 554 SVRRIA--RILLPDTSDFVLSPCTF 622
           SV+R A  R++LP T  F L+P TF
Sbjct: 13  SVQRTAWQRLVLPSTRKFSLTPTTF 37


>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 255

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 320 SMRLSSKFQMSGVFISSKWITT 255
           SM  S+ FQ+ G ++S  WI T
Sbjct: 226 SMNWSAMFQVVGAYLSQIWIIT 247


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 294 DVWGVYQFKVDYDRVGYTRLYHST 223
           D W  Y F     R+GY RL+ ST
Sbjct: 887 DRWCQYIFYRGVKRIGYARLHRST 910


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,730,992
Number of Sequences: 5004
Number of extensions: 56202
Number of successful extensions: 151
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)