Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_C13
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0771 + 5917550-5917829,5918390-5918526,5918617-5918742,591...   167   5e-42
06_01_0065 + 549972-550770,551577-552190,552392-552544,552769-55...    30   1.4  
05_05_0258 - 23656473-23657828                                         29   3.2  
02_05_0135 - 26165263-26165284,26165400-26165458,26165506-261657...    28   5.6  
05_05_0042 - 21798255-21798871,21799400-21799777,21799861-218008...    28   7.4  
06_01_0609 + 4404287-4405023,4405496-4405631,4405724-4405876,440...    27   9.8  

>07_01_0771 +
           5917550-5917829,5918390-5918526,5918617-5918742,
           5919168-5919221,5919344-5919457,5919895-5919950,
           5920017-5920058,5920580-5920655,5920765-5920836,
           5920908-5921033,5921117-5921221,5921333-5921416,
           5921636-5921683
          Length = 439

 Score =  167 bits (407), Expect = 5e-42
 Identities = 77/174 (44%), Positives = 106/174 (60%)
 Frame = -1

Query: 612 GDKTKSDVSGNKILAIRLTEWVFGERGRLRVRNVDHHRQGEKEPSSAYTITDTVVYRIEI 433
           G K + + +GN+      ++WVF ERG L+  NV H++ GE      Y I D + Y +EI
Sbjct: 266 GSKIRHEKAGNEQFVTETSKWVFHERGHLKAVNVKHNKVGETNEPGMYRINDDLEYSVEI 325

Query: 432 EELKNGKWQPFEANDVQLEFVRIDPFIRTTLQKKPNGVYEAVFKVPDVWGVYQFKVDYDR 253
            E     W+P+ A+DVQ++F  + P++  TL     GV+   FKVPDV+GV+QFKV+Y R
Sbjct: 326 YEWSGTSWKPYVADDVQVQFYMMSPYVLKTLSTDKKGVFSTSFKVPDVYGVFQFKVEYQR 385

Query: 252 VGYTRLYHSTQVSVRPLQHTQYERFIPSAYPYYVXXXXXMIGVCLFXFVXLYYK 91
           +GYT L  S Q+ VRP +H +YERFI SAYPYY      M    +F FV LY+K
Sbjct: 386 LGYTGLSLSKQIPVRPYRHNEYERFITSAYPYYAASFSTMGAFFIFSFVYLYHK 439


>06_01_0065 +
           549972-550770,551577-552190,552392-552544,552769-552885,
           552972-553076,553269-553334,553430-553494,553577-553778,
           554026-554169,554212-554340
          Length = 797

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
 Frame = -1

Query: 432 EELKNGKW-QPFEANDVQLEFVRIDPFIRTTLQKKPNGVYEAVFKVPDV-W----GVYQF 271
           E  K+  W QP++AN+++   + +D F   T   +P+   E    +PDV W    G+   
Sbjct: 444 ENSKHDWWRQPWDANEIEGLSITMDDFEEATKMVQPSLRREGFSSIPDVTWDDVGGLDSL 503

Query: 270 KVDYDR 253
           + ++DR
Sbjct: 504 RKEFDR 509


>05_05_0258 - 23656473-23657828
          Length = 451

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 258 DRVGYTRLYHSTQVSVRPLQHTQYERFIP 172
           DR    R+ H  +V+V+PLQH  + R +P
Sbjct: 62  DRRTMARVCHDWRVAVKPLQHAPHRRPLP 90


>02_05_0135 -
           26165263-26165284,26165400-26165458,26165506-26165721,
           26166309-26166362,26167029-26167123,26167220-26167317,
           26167413-26167555,26167900-26168031,26168695-26168823,
           26169370-26169831
          Length = 469

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 430 RAKEWQMAAFRSKRCAARVCANRPFYTHNFT 338
           R K W++  F S+ CA        FY+ +FT
Sbjct: 174 RNKGWRVVVFNSRGCAGSPVTTAKFYSASFT 204


>05_05_0042 -
           21798255-21798871,21799400-21799777,21799861-21800820,
           21800918-21800957,21801471-21801766,21802696-21802774,
           21803013-21803100,21803189-21803273,21803364-21803625,
           21803720-21805027,21806187-21806393,21807288-21807519,
           21808267-21808353,21808427-21808735,21808879-21808957,
           21809788-21809867,21809952-21810029,21810744-21810831,
           21811102-21811241,21811342-21811415,21812043-21812125,
           21812403-21812516,21813975-21814136,21814377-21814641
          Length = 2036

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
 Frame = -3

Query: 403 FRSKRCAARVCANR------PFYTHNFTKETQWRL*GCLQSSRCLGCLSVQSGLRQGRVY 242
           F SKR  ++ C         PF+  NF+  + +R   CL SSR LG  S    LR+ +  
Sbjct: 487 FSSKRMCSQACVGNSSWEGWPFW--NFSPSSYFRNSSCLGSSRGLGVNSNFLRLRRQKNS 544

Query: 241 KTLSLNTGVSPPTTT 197
              S+ + +S  ++T
Sbjct: 545 NYSSMASSISSVSST 559


>06_01_0609 + 4404287-4405023,4405496-4405631,4405724-4405876,
            4405985-4406128,4406224-4406375,4406453-4406552,
            4406653-4406775,4406876-4407037,4407190-4407247,
            4407324-4407502,4408294-4408402,4408567-4408637,
            4408891-4408986,4409727-4409803,4410983-4411066,
            4411473-4411607,4411744-4411819,4413072-4413167,
            4413580-4413671,4413745-4413868,4413966-4414052
          Length = 996

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 7/96 (7%)
 Frame = +2

Query: 377  SSCTSFASKGCHLPFFSSSISILYTTVSVMV*ALDGSFSPCL*W------STLRTRKRPR 538
            S+C  +   GC  P F SS   +    S ++ ALD   S  + W        + TR+ P 
Sbjct: 804  STCEVYTCSGCTFPAFHSSTPGVGEQRSQLL-ALDQQISEFM-WVQLFIFQKISTRRMPL 861

Query: 539  SPNTHSVRRIARIL-LPDTSDFVLSPCTFVTGELKA 643
              N       ARI  + D  +FV++    +   LKA
Sbjct: 862  QQNVELAAHNARIYGVDDMIEFVVADFFHLAPSLKA 897


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,576,632
Number of Sequences: 37544
Number of extensions: 362016
Number of successful extensions: 901
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)