Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_C13
(651 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z36753-9|CAA85337.1| 445|Caenorhabditis elegans Hypothetical pr... 205 2e-53
M77697-3|AAA27898.3| 616|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical pr... 29 2.2
AC025716-16|AAK39609.2| 917|Caenorhabditis elegans Hypothetical... 29 2.9
U52002-3|AAL02476.1| 1306|Caenorhabditis elegans Cadherin family... 28 6.6
U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family... 28 6.6
Z81521-2|CAB04224.1| 514|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z68342-3|CAA92773.1| 751|Caenorhabditis elegans Hypothetical pr... 27 8.7
AL117203-15|CAD57713.2| 670|Caenorhabditis elegans Hypothetical... 27 8.7
AL117203-14|CAD57712.2| 587|Caenorhabditis elegans Hypothetical... 27 8.7
AF076840-1|AAC95522.1| 514|Caenorhabditis elegans Rad17-like pr... 27 8.7
AC006633-6|AAK68378.4| 578|Caenorhabditis elegans Hypothetical ... 27 8.7
>Z36753-9|CAA85337.1| 445|Caenorhabditis elegans Hypothetical
protein T09A5.11 protein.
Length = 445
Score = 205 bits (501), Expect = 2e-53
Identities = 103/172 (59%), Positives = 117/172 (68%), Gaps = 1/172 (0%)
Frame = -1
Query: 588 SGNKILAIRLTEWVFGERGRLRVRNVDHHRQGEKEPS-SAYTITDTVVYRIEIEELKNGK 412
SGN A +T WV E G LRV+ V+HH++GE P Y IT+ VVY IEIEELKNGK
Sbjct: 263 SGNADFATAITRWVMKESGVLRVKTVNHHKKGETVPPVEGYFITEDVVYTIEIEELKNGK 322
Query: 411 WQPFEANDVQLEFVRIDPFIRTTLQKKPNGVYEAVFKVPDVWGVYQFKVDYDRVGYTRLY 232
W PF+ DVQLEFVRIDPF+R TL K NG FK+PDV GV++F VDY RVGYT LY
Sbjct: 323 WVPFQGKDVQLEFVRIDPFVRATL-KNSNGRLSVAFKLPDVLGVFKFLVDYRRVGYTHLY 381
Query: 231 HSTQVSVRPLQHTQYERFIPSAYPYYVXXXXXMIGVCLFXFVXLYYKEXQPK 76
QVSVRPL HTQYERFI SAYPYY M G+ LF V LY+K+ K
Sbjct: 382 DVQQVSVRPLWHTQYERFIRSAYPYYASSFSMMAGLVLFSIVYLYHKDTPVK 433
>M77697-3|AAA27898.3| 616|Caenorhabditis elegans Hypothetical
protein B0303.4 protein.
Length = 616
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/63 (31%), Positives = 29/63 (46%)
Frame = +2
Query: 461 VMV*ALDGSFSPCL*WSTLRTRKRPRSPNTHSVRRIARILLPDTSDFVLSPCTFVTGELK 640
V V L F+P + W L R R R+P +R+A + DT+ + SP T +
Sbjct: 58 VQVLHLGQEFTPPVTWERLVQRMRARAPRIQGEQRVA---ISDTNIVIQSPNTVIDSPAP 114
Query: 641 ASS 649
A S
Sbjct: 115 ARS 117
>Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical
protein T16G12.5 protein.
Length = 1142
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 543 QTPIQ*GESRESCCLIHLTLFCHHVLL 623
Q P Q + CCLI LT+F H+LL
Sbjct: 150 QPPFQSCTNSPPCCLIILTIFLKHILL 176
>AC025716-16|AAK39609.2| 917|Caenorhabditis elegans Hypothetical
protein Y39G10AR.5 protein.
Length = 917
Score = 29.1 bits (62), Expect = 2.9
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Frame = -1
Query: 441 IEIEELKNGKWQPFEAN---DVQL-EFVRIDPFIRTTLQKKPNGVYEAVFKVPDVWGVYQ 274
IEI K+ + P +A D+ L RI P + LQ V+EA+ + D +
Sbjct: 579 IEISRNKSHIFHPLDAKLVLDILLIASERILPLTSSALQHPCQAVWEAIQNLVD----QE 634
Query: 273 FK-VDYDRVGYTRLYHSTQVSVRP 205
F +DYD++G + + + +V +RP
Sbjct: 635 FDWLDYDQIGTSAMRFALEVYLRP 658
>U52002-3|AAL02476.1| 1306|Caenorhabditis elegans Cadherin family
protein 5, isoformb protein.
Length = 1306
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +2
Query: 425 SSSISILYTTVSVMV*ALDGSFSPCL*WSTLRTRKRPRSPNTHS 556
+S+I ++ V+V + A+ G + C+ WS +T +R S +HS
Sbjct: 1122 TSNILLIILAVTVALGAIIGICAVCVFWSRYKTAQRNASNFSHS 1165
>U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family
protein 5, isoforma protein.
Length = 1544
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +2
Query: 425 SSSISILYTTVSVMV*ALDGSFSPCL*WSTLRTRKRPRSPNTHS 556
+S+I ++ V+V + A+ G + C+ WS +T +R S +HS
Sbjct: 1266 TSNILLIILAVTVALGAIIGICAVCVFWSRYKTAQRNASNFSHS 1309
>Z81521-2|CAB04224.1| 514|Caenorhabditis elegans Hypothetical
protein F32A11.2 protein.
Length = 514
Score = 27.5 bits (58), Expect = 8.7
Identities = 23/101 (22%), Positives = 44/101 (43%)
Frame = -2
Query: 494 ERRNRPVPIPLQTLLYTELKLKS*RMANGSLSKQTMCS*SLCESTLLYAQLYKRNPMASM 315
+RR + PIP + L+ TEL+ ++ +M S L + ++ N
Sbjct: 282 KRRRKSAPIP-EPLVRTELE----HDPTDIITMSSMTSEKLLDFLFQNEPIFCSNISKYR 336
Query: 314 RLSSKFQMSGVFISSKWITTGSGIQDFITQHRCQSAHYNTH 192
++ F M F++ W T S +D++ Q +S +N +
Sbjct: 337 YVAETFSMCD-FLTGDWTTRKSLPEDYVAQMATRSVMWNNY 376
>Z68342-3|CAA92773.1| 751|Caenorhabditis elegans Hypothetical
protein F38E11.4 protein.
Length = 751
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = -2
Query: 314 RLSSKFQMSGVFISSKWITTGSGIQDFITQH--RCQSAHYNTHNMSASYRAPTHTTS 150
RLS++ +MSG+ +S K+ T SG +I H C+ + NT PT S
Sbjct: 512 RLSTECRMSGISVSLKFATPTSG-TIYIKDHFSSCRQSFSNTSFAELHIPFPTEDDS 567
>AL117203-15|CAD57713.2| 670|Caenorhabditis elegans Hypothetical
protein Y48C3A.5b protein.
Length = 670
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = +3
Query: 189 IVCVVVGGLTPVLSDKVLYTRPC---RNPL*TDKHP 287
+VC VVGGL V+S LY R C RNP+ T +P
Sbjct: 59 LVCGVVGGLIVVISVVYLY-RYCLKRRNPVTTTVNP 93
>AL117203-14|CAD57712.2| 587|Caenorhabditis elegans Hypothetical
protein Y48C3A.5a protein.
Length = 587
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = +3
Query: 189 IVCVVVGGLTPVLSDKVLYTRPC---RNPL*TDKHP 287
+VC VVGGL V+S LY R C RNP+ T +P
Sbjct: 59 LVCGVVGGLIVVISVVYLY-RYCLKRRNPVTTTVNP 93
>AF076840-1|AAC95522.1| 514|Caenorhabditis elegans Rad17-like
protein protein.
Length = 514
Score = 27.5 bits (58), Expect = 8.7
Identities = 23/101 (22%), Positives = 44/101 (43%)
Frame = -2
Query: 494 ERRNRPVPIPLQTLLYTELKLKS*RMANGSLSKQTMCS*SLCESTLLYAQLYKRNPMASM 315
+RR + PIP + L+ TEL+ ++ +M S L + ++ N
Sbjct: 282 KRRRKSAPIP-EPLVRTELE----HDPTDIITMSSMTSEKLLDFLFQNEPIFCSNISKYR 336
Query: 314 RLSSKFQMSGVFISSKWITTGSGIQDFITQHRCQSAHYNTH 192
++ F M F++ W T S +D++ Q +S +N +
Sbjct: 337 YVAETFSMCD-FLTGDWTTRKSLPEDYVAQMATRSVMWNNY 376
>AC006633-6|AAK68378.4| 578|Caenorhabditis elegans Hypothetical
protein F35B3.7 protein.
Length = 578
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/58 (27%), Positives = 25/58 (43%)
Frame = -1
Query: 516 NVDHHRQGEKEPSSAYTITDTVVYRIEIEELKNGKWQPFEANDVQLEFVRIDPFIRTT 343
N+ + S+A T D R ++G WQPF +N + ID F+ +T
Sbjct: 253 NIPRPVHSTQSASNALTTMDHRTLRDVSSRRRSGTWQPFSSNTYNADRPPID-FVTST 309
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,262,104
Number of Sequences: 27780
Number of extensions: 322985
Number of successful extensions: 863
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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