Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_C12
         (858 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016681-3|AAB66173.1|  159|Caenorhabditis elegans Hypothetical ...    32   0.60 
AL110484-6|CAE46683.1| 1345|Caenorhabditis elegans Hypothetical ...    31   1.4  
AL110484-5|CAB60334.3| 1343|Caenorhabditis elegans Hypothetical ...    31   1.4  
Z93383-7|CAB07621.1|  285|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z73102-13|CAA97405.1|  836|Caenorhabditis elegans Hypothetical p...    29   4.2  
AF016665-3|AAC71182.3|  330|Caenorhabditis elegans Nuclear hormo...    29   4.2  
AF016654-8|AAB66025.2|  331|Caenorhabditis elegans Hypothetical ...    29   4.2  

>AF016681-3|AAB66173.1|  159|Caenorhabditis elegans Hypothetical
           protein F22E5.9 protein.
          Length = 159

 Score = 31.9 bits (69), Expect = 0.60
 Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
 Frame = -3

Query: 565 WKMSYIKVKQEESSTQTQE-----IKNAPRKAKLRQDVKVLKQKLKSREIVIVNIKSILD 401
           WK  Y  +K    +  + E     +KNA  K +   D  V K+KL +        KS+ D
Sbjct: 7   WKKCYDSIKTVAKTVPSAEDSMKGVKNAASKMRAGVDEIVEKRKLYAESETAKLKKSLKD 66

Query: 400 LLKKNGDF*L-N*NLNCE 350
           L K+N D  + N NL+ E
Sbjct: 67  LSKENSDLKMQNLNLSAE 84


>AL110484-6|CAE46683.1| 1345|Caenorhabditis elegans Hypothetical
            protein Y38E10A.6b protein.
          Length = 1345

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 12/34 (35%), Positives = 24/34 (70%)
 Frame = -3

Query: 550  IKVKQEESSTQTQEIKNAPRKAKLRQDVKVLKQK 449
            I  K E++  + QEI+ +P+K++ RQ+++ + QK
Sbjct: 954  IPKKSEKAPEKPQEIEKSPKKSEKRQEIQEIPQK 987


>AL110484-5|CAB60334.3| 1343|Caenorhabditis elegans Hypothetical
            protein Y38E10A.6a protein.
          Length = 1343

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 12/34 (35%), Positives = 24/34 (70%)
 Frame = -3

Query: 550  IKVKQEESSTQTQEIKNAPRKAKLRQDVKVLKQK 449
            I  K E++  + QEI+ +P+K++ RQ+++ + QK
Sbjct: 952  IPKKSEKAPEKPQEIEKSPKKSEKRQEIQEIPQK 985


>Z93383-7|CAB07621.1|  285|Caenorhabditis elegans Hypothetical
           protein F54B8.8 protein.
          Length = 285

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 89  VLVSLFPKSWFSSXX*VQLIFCSLISQLLFLFICVFYVSL 208
           +L S+F K        + L++C      LF F+C F+VS+
Sbjct: 26  LLYSIFCKKNIPFKTELALVYCRFAVDTLFYFLCEFFVSI 65


>Z73102-13|CAA97405.1|  836|Caenorhabditis elegans Hypothetical
           protein B0035.12 protein.
          Length = 836

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -3

Query: 481 LRQDVKVLKQKLKSREIVIVNIKSILDLLKKNGDF 377
           L ++++ +KQK+      +V    +L LL+KNGDF
Sbjct: 18  LDEEIQKIKQKMIDDSQSVVLANQLLILLRKNGDF 52


>AF016665-3|AAC71182.3|  330|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 261 protein.
          Length = 330

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = -1

Query: 798 TACGLFFSENR-ESFRVIMANTCIVSGFKRESSPVCGISFHISDSLINFY 652
           TAC  FF     + FR I  N C++S  K+ +   C     I   +  FY
Sbjct: 27  TACASFFGRTTVDKFRCIANNKCVISCAKKITCRSCRYDSCIRAGMNKFY 76


>AF016654-8|AAB66025.2|  331|Caenorhabditis elegans Hypothetical
           protein C17A2.1 protein.
          Length = 331

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = -1

Query: 798 TACGLFFSENR-ESFRVIMANTCIVSGFKRESSPVCGISFHISDSLINFY 652
           TAC  FF     + FR I  N C++S  K+ +   C     I   +  FY
Sbjct: 27  TACASFFGRTTVDKFRCIANNKCVISCAKKITCRSCRYDSCIRAGMNKFY 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,845,345
Number of Sequences: 27780
Number of extensions: 365409
Number of successful extensions: 931
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)