Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_C11
         (350 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0583 - 19684388-19684498,19685083-19685216,19685765-196858...    26   9.6  

>07_03_0583 -
           19684388-19684498,19685083-19685216,19685765-19685888,
           19685982-19686251,19686961-19687155,19687236-19687328,
           19687411-19687539,19687646-19689277
          Length = 895

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +2

Query: 176 KIYFNE--SSCRIEMILIDLEIYIFCASNMVIAYQLCTKQLLSLTHVCL 316
           K YF+    S R+EM+LID E+  +  S +      C   +  +   CL
Sbjct: 538 KTYFDSWIGSARVEMLLIDAEVDYWKESLLKTCQVDCLAVISPIAKACL 586


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,756,657
Number of Sequences: 37544
Number of extensions: 96119
Number of successful extensions: 151
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)