Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_C11
         (350 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64840-5|AAB04963.2|  346|Caenorhabditis elegans Hypothetical pr...    26   6.6  
U53141-6|AAA96108.1|  346|Caenorhabditis elegans Hypothetical pr...    26   6.6  
Z83216-2|CAB05673.1|  315|Caenorhabditis elegans Hypothetical pr...    26   8.7  

>U64840-5|AAB04963.2|  346|Caenorhabditis elegans Hypothetical
           protein ZC317.6 protein.
          Length = 346

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 255 IWLLPINYVQSSY 293
           +W+LP+NY QS Y
Sbjct: 50  VWVLPLNYSQSKY 62


>U53141-6|AAA96108.1|  346|Caenorhabditis elegans Hypothetical
           protein C14C11.1 protein.
          Length = 346

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 255 IWLLPINYVQSSY 293
           +W+LP+NY QS Y
Sbjct: 50  VWVLPLNYSQSKY 62


>Z83216-2|CAB05673.1|  315|Caenorhabditis elegans Hypothetical
           protein C08F11.2 protein.
          Length = 315

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 229 RNIYFLRIEYGYCLSIMYKAVIVAYSRLPF 318
           RNI F +IEY   L+++   VI  +S + F
Sbjct: 85  RNIGFKKIEYEIFLTLLINGVISFFSSMSF 114


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,399,399
Number of Sequences: 27780
Number of extensions: 102150
Number of successful extensions: 185
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)