Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_C07
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    28   1.2  
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    26   5.0  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   8.7  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    25   8.7  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    25   8.7  

>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/43 (27%), Positives = 26/43 (60%)
 Frame = +2

Query: 350 SFVARFFKSNKLYHIPSSTHVFNLLYFNHSMNSILVILYVFRS 478
           S+++    + KLYH+PS+   + L+   H++   L+ L+++ S
Sbjct: 466 SYISFVMAAWKLYHLPSN-WTYGLVSLRHALGFGLIALHIYTS 507


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +1

Query: 592 SSGALVPAERRYGKLARITSVYLLIGIKKYFLDACXYQIVWPL*STT 732
           S  AL  +E  Y      TS+Y    +  + +D C Y  V  L  TT
Sbjct: 217 SRSALAESEIEYDDNHVSTSIYFTFPVNSFSIDGCEYNNVKALVWTT 263


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +1

Query: 391  YPFIHSRLQFIVF*SFYE--*YTSNSLCFS 474
            YP ++S LQFI+   F+E   +T  +LC S
Sbjct: 3247 YPRLYSILQFIILKPFFENSKFTKQNLCES 3276


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 593 PVVHSSLQSDAMANSRASQASTFSSE*KNISLMRVSIK 706
           P  H+S Q   M+NS ASQ      E +  +  R S++
Sbjct: 654 PAAHTSAQMQRMSNSFASQTKQVFGEQRTENSARESLR 691


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 368  FKSNKLYHIPSSTHVFNLLYFN 433
            F  N ++H PS+T   N + FN
Sbjct: 1034 FAGNSIFHYPSNTADMNTIVFN 1055


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,581,441
Number of Sequences: 5004
Number of extensions: 45287
Number of successful extensions: 90
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)