Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_C06
         (776 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0834 - 21626491-21626508,21626720-21626843,21626927-216270...    77   1e-14
03_04_0157 + 17791540-17791681,17792809-17792908,17793386-177934...    30   2.4  
02_04_0611 + 24347384-24350015,24350126-24350497,24350561-243508...    30   2.4  
01_01_0101 - 766382-767487,767599-767756,767900-768615                 28   7.2  
06_03_0316 - 19491636-19491649,19491880-19492056,19493463-194937...    28   9.5  

>08_02_0834 -
           21626491-21626508,21626720-21626843,21626927-21627012,
           21627869-21627874
          Length = 77

 Score = 77.4 bits (182), Expect = 1e-14
 Identities = 31/57 (54%), Positives = 43/57 (75%)
 Frame = -3

Query: 774 QSKYIGTGHADXTKYEWLMNQHRDSCCSYMGHPDLLSYFAIVENESKARVKFNLMER 604
           Q+KY+GTGHAD  ++EW +N  RDS  SY+GH  +L+YF+I ENES  R ++N M+R
Sbjct: 17  QAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFSIAENESIGRERYNFMQR 73


>03_04_0157 + 17791540-17791681,17792809-17792908,17793386-17793477,
            17793562-17793620,17794135-17795637,17796478-17796720,
            17796831-17797145,17797571-17797573,17798399-17798638,
            17798975-17799259,17799335-17799556,17800105-17800266,
            17800411-17800545,17802452-17802688,17802787-17802960,
            17803692-17803934
          Length = 1384

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +1

Query: 73   TILVVHGNVSYLTILHLYIIKMSKRNFSIFLKSIFMIKITPGYLKN 210
            T+LV HG V     LH  + +++  +F+I L SIF+ + +   + N
Sbjct: 1080 TVLVTHGGVEMGQGLHTKVAQVAASSFNIPLSSIFISETSTDKVPN 1125


>02_04_0611 +
           24347384-24350015,24350126-24350497,24350561-24350805,
           24350997-24351059,24351919-24352422
          Length = 1271

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = -3

Query: 399 QLLSIKTTNNRYSL*FRIGSMVKCLTILFLYTNLF--HIVLSQRN 271
           Q+LSI+TT    +L F IG+ +  LT LFL  N+F  HI  S  N
Sbjct: 250 QILSIQTTLLGGTLPFDIGNTLPNLTKLFLADNMFEGHIPASLGN 294


>01_01_0101 - 766382-767487,767599-767756,767900-768615
          Length = 659

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 649 YDRKVTQQIRMTHVAAARVAMLVHKPFIFCXVGVAC 756
           YDR + QQ+ +  ++AA VA +       C +G+ C
Sbjct: 564 YDRLIEQQVGVGEISAATVANMHELERKLCIIGLHC 599


>06_03_0316 -
           19491636-19491649,19491880-19492056,19493463-19493736,
           19493814-19493962,19494065-19494280,19494390-19494651
          Length = 363

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 78  FGGSR*C-KLFNNFTFIHNKNVKKKLFNIFKKH 173
           +G    C K FN F+++HN  +K+ L  +  KH
Sbjct: 244 YGSRSSCLKRFNTFSWVHNSMLKRALAKLRAKH 276


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,804,594
Number of Sequences: 37544
Number of extensions: 318026
Number of successful extensions: 514
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)