Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_C05
(754 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0933 + 32846658-32846729,32847038-32847133,32847243-328474... 31 0.74
08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468... 31 1.3
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329... 31 1.3
03_02_0155 - 5974118-5974173,5974242-5974314,5974393-5974500,597... 30 1.7
07_01_0080 + 587674-588510 30 2.3
06_01_0362 - 2587112-2587774 29 3.0
03_01_0515 - 3864796-3865425 29 3.0
02_05_0686 - 30900748-30902167,30903442-30904742 29 5.2
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 28 6.9
06_01_0486 - 3455030-3455770 28 6.9
01_07_0021 - 40533864-40534583,40534779-40534814,40534909-405350... 28 6.9
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 28 9.2
06_01_0908 - 7006160-7007488 28 9.2
>02_05_0933 +
32846658-32846729,32847038-32847133,32847243-32847411,
32847608-32847669,32848364-32849320,32850036-32850119,
32850307-32850595,32850645-32850694
Length = 592
Score = 31.5 bits (68), Expect = 0.74
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +1
Query: 481 NDAPSRRQDGSEGAHHRSLNLSGSVSCVAVASRVGVAVWSALRRLPRAS 627
+D P ++ G HHR+ L V V +R G WS +RRL +S
Sbjct: 511 DDNPKTKRGGKR-KHHRAWTLCEVVKLVDGVARYGAGKWSEIRRLAFSS 558
>08_01_0539 +
4679392-4681282,4682060-4682104,4682403-4683560,
4683834-4684204,4684290-4684835,4684927-4685027,
4685117-4685933,4686025-4686213,4686313-4686384,
4686477-4686587,4686647-4686652,4686694-4686794,
4687714-4687813,4687891-4687986,4688157-4688273,
4688367-4688492,4688566-4688619,4688745-4688992,
4689087-4689195,4689284-4689583,4689799-4689963
Length = 2240
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/29 (55%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +3
Query: 672 PP*PP*PS*P*PPXP*L--SYPPP*PP*P 752
PP PP P P PP P L + PPP PP P
Sbjct: 428 PPLPPPPPPPPPPPPPLPPNMPPPLPPPP 456
>02_01_0458 +
3291563-3291733,3292082-3292769,3292847-3293363,
3293438-3293637,3294137-3294372,3294469-3295302
Length = 881
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/25 (56%), Positives = 14/25 (56%)
Frame = +3
Query: 672 PP*PP*PS*P*PPXP*LSYPPP*PP 746
PP PP P P PP P PPP PP
Sbjct: 354 PPPPPPPPPPPPPPPPPPRPPPPPP 378
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/25 (56%), Positives = 14/25 (56%)
Frame = +3
Query: 672 PP*PP*PS*P*PPXP*LSYPPP*PP 746
PP PP P P PP P PPP PP
Sbjct: 355 PPPPPPPPPPPPPPPPPRPPPPPPP 379
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/27 (55%), Positives = 15/27 (55%)
Frame = +3
Query: 672 PP*PP*PS*P*PPXP*LSYPPP*PP*P 752
PP PP P P PP P PPP PP P
Sbjct: 353 PPPPPPPPPPPPPPP---PPPPRPPPP 376
>03_02_0155 -
5974118-5974173,5974242-5974314,5974393-5974500,
5975189-5976914,5977065-5977620,5978008-5978485
Length = 998
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/32 (53%), Positives = 18/32 (56%)
Frame = +3
Query: 657 PE*S*PP*PP*PS*P*PPXP*LSYPPP*PP*P 752
PE + PP P P P PP P S PPP PP P
Sbjct: 81 PENALPPSSPPPPSPPPPPP--SSPPPVPPSP 110
>07_01_0080 + 587674-588510
Length = 278
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/27 (55%), Positives = 15/27 (55%)
Frame = +3
Query: 672 PP*PP*PS*P*PPXP*LSYPPP*PP*P 752
PP PP PS PP P PPP PP P
Sbjct: 93 PPPPPPPSSGSPPPPPPPPPPPPPPPP 119
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = +3
Query: 672 PP*PP*PS*P*PPXP*LSYPPP*PP*P 752
PP PP P PP P PPP PP P
Sbjct: 95 PPPPPSSGSPPPPPPPPPPPPPPPPPP 121
>06_01_0362 - 2587112-2587774
Length = 220
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +1
Query: 490 PSRRQDGSEGAHHRSLNLSGSVSCVAVASRVGVAVWSALRRLPRASCP 633
P DG H ++ LS V+CVA + ++ SA R P+A P
Sbjct: 6 PPSPPDGEHSFGHEAIALSFFVACVAATVVMASSMCSACGRKPKADDP 53
>03_01_0515 - 3864796-3865425
Length = 209
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +3
Query: 681 PP*PS*P*PPXP*LSYPPP*PP*P 752
PP P P PP P + PPP PP P
Sbjct: 83 PPPPPLPPPPPPPAASPPPPPPSP 106
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = +3
Query: 672 PP*PP*PS*P*PPXP*LSYPPP*PP*P 752
PP PP P P PP PPP PP P
Sbjct: 83 PPPPPLPPPPPPPAASPPPPPPSPPPP 109
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = +3
Query: 675 P*PP*PS*P*PPXP*LSYPPP*PP 746
P PP P P PP P PPP PP
Sbjct: 336 PPPPPPKGPPPPPPAKGPPPPPPP 359
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/28 (57%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +3
Query: 672 PP*PP*PS*P*PPXP*L-SYPPP*PP*P 752
PP PP P+ P PP P S PPP PP P
Sbjct: 1161 PPSPP-PATPPPPPPLSPSLPPPPPPPP 1187
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/30 (53%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Frame = +3
Query: 672 PP*PP*PS*P*P---PXP*LSYPPP*PP*P 752
PP PP PS P P P P PPP PP P
Sbjct: 1183 PPPPPLPSGPPPQPAPPPLPIQPPPIPPPP 1212
>06_01_0486 - 3455030-3455770
Length = 246
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = +3
Query: 672 PP*PP*PS*P*PPXP*LSYPPP*PP*P 752
PP PP P PP P PPP PP P
Sbjct: 118 PPTPPYVPPPTPPSPPPYVPPPTPPSP 144
>01_07_0021 -
40533864-40534583,40534779-40534814,40534909-40535048,
40535837-40535922,40536430-40536653,40536770-40536865,
40538766-40538833,40539945-40540055,40540799-40540955
Length = 545
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = +3
Query: 672 PP*PP*PS*P*PPXP*LSYPPP*PP*P 752
P PP P PP P S PPP PP P
Sbjct: 434 PEHPPPPESTSPPPPPTSDPPPVPPPP 460
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/27 (55%), Positives = 15/27 (55%)
Frame = +3
Query: 672 PP*PP*PS*P*PPXP*LSYPPP*PP*P 752
PP PP P PP P S PPP PP P
Sbjct: 106 PPPPPPP----PPSPPPSAPPPPPPPP 128
>06_01_0908 - 7006160-7007488
Length = 442
Score = 27.9 bits (59), Expect = 9.2
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Frame = +1
Query: 472 VEWNDAPSRRQDGSEGAHHRSLNLSGSVSCVAVASRVGVAVWS--ALRRLPRASCPPGTR 645
V+ A R DG G HHR + C+ + + +W+ LRRL S P R
Sbjct: 383 VDVTPAMMARADGHPGEHHRRWRGRNANDCLHLCLPGPINMWNDVLLRRLAELSPPSDAR 442
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,497,694
Number of Sequences: 37544
Number of extensions: 217246
Number of successful extensions: 780
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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