Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_C05
         (754 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (gr...    29   2.7  
U23515-9|AAP82644.1|  360|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U23515-8|AAP82645.1|  362|Caenorhabditis elegans Hypothetical pr...    29   2.7  

>U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (grd
           related) protein 6 protein.
          Length = 240

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +3

Query: 681 PP*PS*P*PPXP*LSYPPP*PP*P 752
           PP P  P PP P +  PPP PP P
Sbjct: 66  PPPPICPPPPPPPMPCPPPPPPMP 89


>U23515-9|AAP82644.1|  360|Caenorhabditis elegans Hypothetical
           protein R144.4a protein.
          Length = 360

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = +3

Query: 672 PP*PP*PS*P*PPXP*LSYPPP 737
           PP PP P  P PP P  S PPP
Sbjct: 3   PPPPPPPPPPPPPPPAASAPPP 24


>U23515-8|AAP82645.1|  362|Caenorhabditis elegans Hypothetical
           protein R144.4b protein.
          Length = 362

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = +3

Query: 672 PP*PP*PS*P*PPXP*LSYPPP 737
           PP PP P  P PP P  S PPP
Sbjct: 3   PPPPPPPPPPPPPPPAASAPPP 24


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,549,991
Number of Sequences: 27780
Number of extensions: 188665
Number of successful extensions: 495
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)