Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_C04
         (606 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0556 - 4136000-4136608                                           29   3.8  
03_02_0755 + 10932897-10933010,10933446-10933577,10933666-109337...    28   6.6  
02_05_1121 + 34262019-34262040,34262144-34262211,34262909-342630...    28   6.6  
02_03_0012 - 13940583-13940853,13942281-13942509,13945275-139454...    27   8.7  

>07_01_0556 - 4136000-4136608
          Length = 202

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +2

Query: 401 TAKIHITSQNAFAGIKYIE*HVLKKKTDSRGFPESSARTQTGNRSRASPLPYISN 565
           T  IH T Q   A  K+IE  +  ++T  R    +S +T + N   A     ++N
Sbjct: 4   TKIIHATKQAEVAVTKFIESDIRNEQTSQRNIAGNSVKTSSSNTIEAPGHVVVTN 58


>03_02_0755 +
           10932897-10933010,10933446-10933577,10933666-10933750,
           10934668-10934831,10934911-10935357
          Length = 313

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 475 KNRQSRVSRVERADANRKPQPRVAPTLHIKQIYIRPIRYDR 597
           + R   VS   RA+ +R+  PRVAPT     + I+  ++DR
Sbjct: 238 EGRTEGVSNHSRANLSRENIPRVAPTPQNPVVAIQKPKHDR 278


>02_05_1121 +
           34262019-34262040,34262144-34262211,34262909-34263067,
           34263146-34263313,34264125-34264278,34264845-34264924,
           34265567-34265839,34265956-34266099,34266750-34266884,
           34266994-34267092,34267530-34267586,34267673-34267877,
           34268159-34268277,34268779-34268877,34268964-34269203
          Length = 673

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
 Frame = +3

Query: 78  MWSRIQKQSLV---QHHYIITYRNPEL---LQYYSPSH*CILL*GKYVIKIK 215
           M  R+ KQ LV   +H Y + YR   L   L  YSPS  C++    YV+ +K
Sbjct: 455 MCMRVSKQLLVWTQEHTYWVAYRFLILGFELDLYSPSEYCMVYWYMYVVLMK 506


>02_03_0012 -
           13940583-13940853,13942281-13942509,13945275-13945476,
           13945961-13946278,13947321-13947419
          Length = 372

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +1

Query: 469 KKKNRQSRVSRVERADANRKPQPRVAPTLHIKQIYIRPIRYDRQ 600
           K+K +++ VSR  RA +  KP    AP   + Q++   +R ++Q
Sbjct: 16  KEKGKKAPVSRSSRAGSQEKP----APNKDVYQLFAEKVRDNKQ 55


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,365,857
Number of Sequences: 37544
Number of extensions: 263263
Number of successful extensions: 683
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)