Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_C03
         (496 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.12c |rpb10||DNA-directed RNA polymerase I, II, and III s...   109   2e-25
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    27   1.6  
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    26   3.6  
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    26   3.6  
SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces pombe...    25   4.7  
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ...    25   4.7  
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom...    25   6.3  

>SPAC1B3.12c |rpb10||DNA-directed RNA polymerase I, II, and III
           subunit Rpb10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 71

 Score =  109 bits (262), Expect = 2e-25
 Identities = 49/67 (73%), Positives = 56/67 (83%)
 Frame = -2

Query: 237 MIIPVRCFTCGKVIGNKWEAYLGLLQADYTEGDALDVLGLKRYCCRRMLLGHVXLIEKLL 58
           MIIP+RCF+CGKVIG+KW+ YL LLQ D TEG+ALD LGL+RYCCRRM+L HV LIEKLL
Sbjct: 1   MIIPIRCFSCGKVIGDKWDTYLTLLQEDNTEGEALDKLGLQRYCCRRMILTHVDLIEKLL 60

Query: 57  NDXPLEK 37
              PL K
Sbjct: 61  CYNPLSK 67


>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 131 SKASPSV*SACSRPK*ASHLFPITFPHVKHRTGI 232
           S +SPS  S  S P    HL P+T PH     G+
Sbjct: 2   SSSSPSSQSRLSVPGRTPHLPPLTIPHTVSAEGL 35


>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +3

Query: 84  VRATFFCSSIFSIQGHPKHHLLCNPP 161
           + AT+    +   +G P     CNPP
Sbjct: 517 IMATYLADRVILFEGQPSRDARCNPP 542


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -1

Query: 205 ESYRKQM-GSLLRPATGGLHRR 143
           ES+RK   G+L  P  GG+HRR
Sbjct: 272 ESFRKHSNGNLSSPKIGGVHRR 293


>SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +3

Query: 81  RVRATFFCSSIFSIQGHPKHHLLCNPPVAGLSKLPICFL*LSRM 212
           +V  TFF  +   I  H K   + N  V    ++P+C   + RM
Sbjct: 191 QVGPTFFLRTYKIIDNHAKSGYISNDLVMWKEEMPVCIAKMFRM 234


>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = -1

Query: 295 LILYNPSASPQL*VVGNKQNDYSSTMFHMRESYRKQMGSLLR 170
           L+  N   +PQ+ +     + Y+S   H++E+ RK+    +R
Sbjct: 341 LVALNSDVAPQVSIANIPPSVYASCPLHVQEAIRKRQEQEIR 382


>SPAC6F6.12 |||autophagy associated protein
           Atg24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 214 ETSYWNNHFVYFLQPKV 264
           E   WNN+  +F+QPK+
Sbjct: 133 ENPNWNNYVRFFIQPKL 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,016,394
Number of Sequences: 5004
Number of extensions: 40080
Number of successful extensions: 72
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)