Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_C03
         (496 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0592 + 4702327-4702416,4702510-4702568,4703900-4703994,470...   101   4e-22
12_01_0511 + 4049760-4049967,4050096-4050166,4051306-4051364,405...    54   6e-08
03_02_0222 + 6540095-6540099,6541215-6541339,6541440-6541766,654...    31   0.38 
06_02_0346 - 14837982-14838122,14838208-14838327,14838411-148385...    28   3.6  

>11_01_0592 +
           4702327-4702416,4702510-4702568,4703900-4703994,
           4704348-4704352
          Length = 82

 Score =  101 bits (241), Expect = 4e-22
 Identities = 53/79 (67%), Positives = 55/79 (69%), Gaps = 18/79 (22%)
 Frame = -2

Query: 237 MIIPVRCFTCGKV------------------IGNKWEAYLGLLQADYTEGDALDVLGLKR 112
           MIIPVRCFTCGKV                  IGNKW+ YL LLQADYTEGDALD LGL R
Sbjct: 1   MIIPVRCFTCGKVSLVSPSHASRLGDGRVLVIGNKWDLYLDLLQADYTEGDALDALGLVR 60

Query: 111 YCCRRMLLGHVXLIEKLLN 55
           YCCRRML+ HV LIEKLLN
Sbjct: 61  YCCRRMLMTHVDLIEKLLN 79


>12_01_0511 +
           4049760-4049967,4050096-4050166,4051306-4051364,
           4052424-4052549,4052943-4053037,4053263-4053312
          Length = 202

 Score = 54.0 bits (124), Expect = 6e-08
 Identities = 24/29 (82%), Positives = 25/29 (86%)
 Frame = -2

Query: 141 DALDVLGLKRYCCRRMLLGHVXLIEKLLN 55
           DALD LGL RYCCRRML+ HV LIEKLLN
Sbjct: 156 DALDALGLVRYCCRRMLMTHVDLIEKLLN 184



 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 21/32 (65%), Positives = 24/32 (75%)
 Frame = -2

Query: 204 KVIGNKWEAYLGLLQADYTEGDALDVLGLKRY 109
           KVIGNKW+ YL LLQADYTEG +    G +RY
Sbjct: 93  KVIGNKWDLYLDLLQADYTEGGSGRQRGEERY 124


>03_02_0222 +
           6540095-6540099,6541215-6541339,6541440-6541766,
           6541815-6543215,6543268-6543357,6543800-6544515,
           6545549-6545707,6545877-6546186,6546794-6546861,
           6547354-6547896
          Length = 1247

 Score = 31.5 bits (68), Expect = 0.38
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -2

Query: 183 EAYLGLLQADYTEGDALDVLGLKRYCCRR-MLLGHVXLIEKLLND 52
           +AY+GLL A +  GD   VL ++ YC RR  LLG +  + K + D
Sbjct: 841 DAYIGLLTAKFERGDEHGVL-IQEYCDRRDELLGSLYDLAKQIVD 884


>06_02_0346 -
           14837982-14838122,14838208-14838327,14838411-14838564,
           14838793-14838866,14838962-14839095,14839207-14839326,
           14843174-14843308,14843842-14843976,14844343-14845003,
           14845103-14845264,14845348-14845510,14880834-14881021
          Length = 728

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +3

Query: 399 LFFAIHNIILLRHKNFLDSQRQS*IHRPAEFI 494
           +F A+ + ++LRHKN    ++Q+ IHR   F+
Sbjct: 85  VFDALRDNVILRHKNKTGPRQQTYIHRRITFL 116


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,918,474
Number of Sequences: 37544
Number of extensions: 223986
Number of successful extensions: 355
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)