Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_C02
         (727 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    28   0.067
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    28   0.067
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    28   0.067
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    28   0.067
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    28   0.067
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    28   0.067
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           28   0.067
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    28   0.067
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    28   0.067
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    25   0.47 
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    25   0.83 
AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory recept...    23   1.9  
AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory recept...    23   1.9  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   4.4  

>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 28.3 bits (60), Expect = 0.067
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +3

Query: 558 PSDKSEVGARSFLVPRVMTTASVPSTASCTESGSRTFPLTIST 686
           P D S  GA     PR     S PS ++ T+S   T PL++ST
Sbjct: 113 PQDLSTNGAP----PRSTPPLSTPSNSNATKSSGLTSPLSVST 151


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 28.3 bits (60), Expect = 0.067
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +3

Query: 558 PSDKSEVGARSFLVPRVMTTASVPSTASCTESGSRTFPLTIST 686
           P D S  GA     PR     S PS ++ T+S   T PL++ST
Sbjct: 113 PQDLSTNGAP----PRSTPPLSTPSNSNATKSSGLTSPLSVST 151


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 28.3 bits (60), Expect = 0.067
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +3

Query: 558 PSDKSEVGARSFLVPRVMTTASVPSTASCTESGSRTFPLTIST 686
           P D S  GA     PR     S PS ++ T+S   T PL++ST
Sbjct: 113 PQDLSTNGAP----PRSTPPLSTPSNSNATKSSGLTSPLSVST 151


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 28.3 bits (60), Expect = 0.067
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +3

Query: 558 PSDKSEVGARSFLVPRVMTTASVPSTASCTESGSRTFPLTIST 686
           P D S  GA     PR     S PS ++ T+S   T PL++ST
Sbjct: 113 PQDLSTNGAP----PRSTPPLSTPSNSNATKSSGLTSPLSVST 151


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 28.3 bits (60), Expect = 0.067
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +3

Query: 558 PSDKSEVGARSFLVPRVMTTASVPSTASCTESGSRTFPLTIST 686
           P D S  GA     PR     S PS ++ T+S   T PL++ST
Sbjct: 113 PQDLSTNGAP----PRSTPPLSTPSNSNATKSSGLTSPLSVST 151


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 28.3 bits (60), Expect = 0.067
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +3

Query: 558 PSDKSEVGARSFLVPRVMTTASVPSTASCTESGSRTFPLTIST 686
           P D S  GA     PR     S PS ++ T+S   T PL++ST
Sbjct: 69  PQDLSTNGAP----PRSTPPLSTPSNSNATKSSGLTSPLSVST 107


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 28.3 bits (60), Expect = 0.067
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +3

Query: 558 PSDKSEVGARSFLVPRVMTTASVPSTASCTESGSRTFPLTIST 686
           P D S  GA     PR     S PS ++ T+S   T PL++ST
Sbjct: 113 PQDLSTNGAP----PRSTPPLSTPSNSNATKSSGLTSPLSVST 151


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 28.3 bits (60), Expect = 0.067
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +3

Query: 558 PSDKSEVGARSFLVPRVMTTASVPSTASCTESGSRTFPLTIST 686
           P D S  GA     PR     S PS ++ T+S   T PL++ST
Sbjct: 113 PQDLSTNGAP----PRSTPPLSTPSNSNATKSSGLTSPLSVST 151


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 28.3 bits (60), Expect = 0.067
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +3

Query: 558 PSDKSEVGARSFLVPRVMTTASVPSTASCTESGSRTFPLTIST 686
           P D S  GA     PR     S PS ++ T+S   T PL++ST
Sbjct: 113 PQDLSTNGAP----PRSTPPLSTPSNSNATKSSGLTSPLSVST 151


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -3

Query: 179 LIYPICRKVKRIFLHFFPCNFFYIRSNI*MLS*VLTYCHL--LRCKIYY 39
           L++ +C     + L F PC +++  + I     +L YC L  L C IYY
Sbjct: 193 LLFLLCLDYFTLHLLFLPCIYYFYSAFIIFTIHLLFYCVLIILLC-IYY 240



 Score = 21.4 bits (43), Expect = 7.7
 Identities = 6/29 (20%), Positives = 16/29 (55%)
 Frame = -1

Query: 175 YIQYVVRLKGYFYIFFLVIFSIYDQIFKC 89
           Y  +++ L  Y++ +  +IF+++     C
Sbjct: 104 YYAFIILLCVYYFYYAFIIFTVHLLFLLC 132


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 255 NPSTTRQSLASAMCPKNEGPYSRY*FNIS 169
           NP+ TR +L +   P++E PY    FN++
Sbjct: 369 NPTKTRTNLPTHRHPQDEIPYCGKIFNLT 397


>AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory receptor
           candidate 62 protein.
          Length = 320

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 157 RLKGYFYIFFLVIFSIYDQIFK 92
           R+  YF + F V+FS     FK
Sbjct: 25  RIHSYFMVAFYVVFSSVSTFFK 46


>AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory receptor
           candidate 37 protein.
          Length = 331

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 157 RLKGYFYIFFLVIFSIYDQIFK 92
           R+  YF + F V+FS     FK
Sbjct: 25  RIHSYFMVAFYVVFSSVSTFFK 46


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 311 GQDHCQVRPRHI 276
           G+D C VR RHI
Sbjct: 347 GEDQCDVRFRHI 358


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,220
Number of Sequences: 336
Number of extensions: 4027
Number of successful extensions: 19
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19363530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)