Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_B20
         (715 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.2  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   5.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.6  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 478 AESTTGSETRPTQKIRRETQ 537
           A  TTG+ T PT+++R+  Q
Sbjct: 252 AAMTTGTTTIPTRRLRKRRQ 271


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 621 EIEKK*LRSYNSSIKFLAF 565
           EIEK+ L S+N  + FL F
Sbjct: 251 EIEKRLLFSHNDRLGFLTF 269


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 527 EKLSGLPNSYFLVNAKNFIE 586
           EKLS  PN++F VN  + I+
Sbjct: 681 EKLSTDPNTHFQVNQSHGIK 700


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,285
Number of Sequences: 438
Number of extensions: 3463
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)