Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_B18
         (726 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0873 - 32372143-32372287,32372678-32372754,32372863-323730...    35   0.076
03_03_0128 - 14677152-14677296,14677381-14677457,14679836-14680312     34   0.13 
09_04_0359 + 16941904-16942110,16943636-16943785,16944084-169442...    32   0.53 
10_07_0126 - 13143485-13144117,13144204-13145238                       28   6.6  
01_01_0145 + 1327172-1327362,1327491-1328169                           28   6.6  

>02_05_0873 -
           32372143-32372287,32372678-32372754,32372863-32373072,
           32374645-32374869
          Length = 218

 Score = 34.7 bits (76), Expect = 0.076
 Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
 Frame = -3

Query: 703 FTALASGDYKVCFSNEFSTFSHKL-VYMELNVGPEQPLPGVGDHATVLTQLETSAEEIHS 527
           FT   +G+Y  CF  + +     + + ++  +G       V      +  +E    ++  
Sbjct: 97  FTTSEAGNYLACFWIDSAEKGSGISINLDWKIGIAAKDWDVIAKKEKIEGVELELRKLEV 156

Query: 526 ALNRIIDHQTHHRLREAQGRKRAEDLNEKVFWWSMGETLAIVCVAFTQVMILKNFFSDK 350
           A+  I  +  + + REA+ R  +E  N +V W+S+      + V+  Q+  L+ +F  K
Sbjct: 157 AVQSIHQNMIYLKAREAEMRTVSEKTNARVAWFSILSLSVCIVVSILQLWHLQGYFQKK 215


>03_03_0128 - 14677152-14677296,14677381-14677457,14679836-14680312
          Length = 232

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 29/123 (23%), Positives = 49/123 (39%), Gaps = 2/123 (1%)
 Frame = -3

Query: 703 FTALASGDYKVCF--SNEFSTFSHKLVYMELNVGPEQPLPGVGDHATVLTQLETSAEEIH 530
           FTA  +GDY  CF   +   T +    +   +    +    V     V   +E   +++ 
Sbjct: 111 FTASEAGDYLACFWAPDHRPTATVGFEFDWRSGVSARDWTNVAKKGQV-DMMEVELKKLE 169

Query: 529 SALNRIIDHQTHHRLREAQGRKRAEDLNEKVFWWSMGETLAIVCVAFTQVMILKNFFSDK 350
             +N I +   + R RE + ++     N ++ W         + VA  Q+  LKNFF  K
Sbjct: 170 DTINSIHEEMFYLRAREEEMQELNRRTNSRMAWLGFFSLAICLSVAGLQLWHLKNFFERK 229

Query: 349 PTL 341
             L
Sbjct: 230 KLL 232


>09_04_0359 +
           16941904-16942110,16943636-16943785,16944084-16944293,
           16944376-16944452,16944554-16944698
          Length = 262

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 12/130 (9%)
 Frame = -3

Query: 703 FTALASGDYKVCFSNEFSTFSHKLVYMEL------------NVGPEQPLPGVGDHATVLT 560
           FT   +G+Y  CFS +       +V + L            +V  ++ L GV      L 
Sbjct: 141 FTTAEAGNYLACFSAD-GRNKRLVVKLNLDWRVGIATKDWDSVAKKEKLEGV---ELELV 196

Query: 559 QLETSAEEIHSALNRIIDHQTHHRLREAQGRKRAEDLNEKVFWWSMGETLAIVCVAFTQV 380
           +LETS + IH  L  +       R +EA  R  +E  N +  W S+   +  + V+  Q+
Sbjct: 197 KLETSVQAIHENLLLL-------RSKEANMRDTSEKTNARATWLSIISLIVCIIVSVLQL 249

Query: 379 MILKNFFSDK 350
             L+ +F  K
Sbjct: 250 WHLQQYFRKK 259


>10_07_0126 - 13143485-13144117,13144204-13145238
          Length = 555

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -3

Query: 493 HRLREAQGRKRAEDLNEKVFWWSMGETLAIV--CVAFTQVMILKNFFSDKP 347
           HR  +A  R  A     ++  +S+GET A+V  C A  + ++    F+D+P
Sbjct: 95  HRALDAMSRDAAAPRARELMAFSVGETPAVVSSCPATAREVLAHPSFADRP 145


>01_01_0145 + 1327172-1327362,1327491-1328169
          Length = 289

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = -2

Query: 623 GTKCWTGAASSWCRRSC-NCSYTVGDI-CR 540
           GT     AASSW  R+C +C+  +GDI CR
Sbjct: 68  GTPRAAPAASSWMDRACPSCNEPIGDIRCR 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,616,560
Number of Sequences: 37544
Number of extensions: 264278
Number of successful extensions: 607
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)