Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_B17
         (582 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46241-2|CAA86315.1|  144|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z37092-6|CAE46667.1|  334|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z37092-5|CAA85456.1|  336|Caenorhabditis elegans Hypothetical pr...    28   4.2  
AF025458-1|AAB70977.2|  384|Caenorhabditis elegans Hypothetical ...    28   4.2  
AL021171-1|CAA15958.1|  204|Caenorhabditis elegans Hypothetical ...    28   5.6  
AF067613-4|AAU20845.1|  327|Caenorhabditis elegans Hypothetical ...    27   9.7  

>Z46241-2|CAA86315.1|  144|Caenorhabditis elegans Hypothetical
           protein C38D4.1b protein.
          Length = 144

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = -1

Query: 465 TLFLHHYLPAYIFKILLLAYIVDHIYVVLQLHEKTRHVTNL 343
           T+ +H   P YI   +L+A+++ HI++   L ++   V+ +
Sbjct: 100 TINVHKDTPKYIGYGILIAFVIFHIFLYFYLEDQKARVSEI 140


>Z37092-6|CAE46667.1|  334|Caenorhabditis elegans Hypothetical
           protein F44F4.5b protein.
          Length = 334

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 526 WLYIISRLLVTLPTLLFYRSNSVPSS 449
           W Y +    V+LP LL YR N V S+
Sbjct: 282 WAYTVPFAAVSLPALLIYRINQVGSN 307


>Z37092-5|CAA85456.1|  336|Caenorhabditis elegans Hypothetical
           protein F44F4.5a protein.
          Length = 336

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 526 WLYIISRLLVTLPTLLFYRSNSVPSS 449
           W Y +    V+LP LL YR N V S+
Sbjct: 284 WAYTVPFAAVSLPALLIYRINQVGSN 309


>AF025458-1|AAB70977.2|  384|Caenorhabditis elegans Hypothetical
           protein C01B12.4 protein.
          Length = 384

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -1

Query: 357 HVTNLFILCVTIWLSYIVLTFKKFSVLNYGNVDLKENDLMSL 232
           HV+ L I CV + ++++   F  F VL Y + +   ND+ +L
Sbjct: 33  HVSCLTIACVFVAITFLSSFFHLFFVLKYVSNERIRNDMYAL 74


>AL021171-1|CAA15958.1|  204|Caenorhabditis elegans Hypothetical
           protein H04D03.1 protein.
          Length = 204

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -1

Query: 468 RTLFLHHYLPAYIFKILLLAYIVDHIYVVLQLHEK 364
           RT+  H   P YI   +L+A+++ HI++   L ++
Sbjct: 97  RTISFHKDTPKYIGCGILIAFVIFHIFLYFYLEDQ 131


>AF067613-4|AAU20845.1|  327|Caenorhabditis elegans Hypothetical
           protein F56D6.7 protein.
          Length = 327

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
 Frame = -1

Query: 549 VLNKFYETGYTLFLGYWLHYLPYFFIDRTLFLHHY----LPAYIFKILLLAYIVDHIYVV 382
           + N FY+T   + +GY +  L   F+     L +     LPA+   I+    IV+  +V+
Sbjct: 62  ITNHFYKTVVLMIIGYVIVVLLVLFLATNSILSYIGFLSLPAWALVIVTYHLIVEVFHVL 121

Query: 381 LQL 373
           + L
Sbjct: 122 ISL 124


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,813,834
Number of Sequences: 27780
Number of extensions: 221785
Number of successful extensions: 573
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)