Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_B17
(582 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 27 0.13
AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor p... 24 0.95
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 23 1.7
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 23 1.7
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 23 1.7
AF144379-1|AAD34586.1| 543|Apis mellifera glutamate transporter... 23 2.2
DQ325082-1|ABD14096.1| 179|Apis mellifera complementary sex det... 22 3.8
U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodops... 21 6.7
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 21 6.7
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 21 6.7
AY703752-1|AAU12748.1| 152|Apis mellifera long-wavelength rhodo... 21 6.7
AF091732-1|AAD02869.2| 154|Apis mellifera long-wavelength rhodo... 21 6.7
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 27.1 bits (57), Expect = 0.13
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +3
Query: 69 FSTXXXFXVFNXLYNYYLQHTFYCDCNLIN*LWTSYFIK 185
F+ V YYL HT+ C ++ W S++IK
Sbjct: 231 FTCLEVVFVLKRRLGYYLFHTYIPTCLIVIMSWVSFWIK 269
>AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor
protein.
Length = 587
Score = 24.2 bits (50), Expect = 0.95
Identities = 10/39 (25%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Frame = -1
Query: 432 IFKILLLAYIVDHIYVVLQLHE--KTRHVTNLFILCVTI 322
+ I+ + ++ ++ V+L ++ K R+VTN+FI+ + +
Sbjct: 71 VLAIVNVMVVLGNVLVILAVYHTSKLRNVTNMFIVSLAV 109
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 23.4 bits (48), Expect = 1.7
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -1
Query: 474 IDRTLFLHHYLPAYIFKILLLAYIVDHIYVV 382
+D L HYL + F L+ + +D+I+++
Sbjct: 155 LDPKLIAKHYLRTWFFLDLISSIPLDYIFLI 185
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 23.4 bits (48), Expect = 1.7
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -1
Query: 474 IDRTLFLHHYLPAYIFKILLLAYIVDHIYVV 382
+D L HYL + F L+ + +D+I+++
Sbjct: 155 LDPKLIAKHYLRTWFFLDLISSIPLDYIFLI 185
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 23.4 bits (48), Expect = 1.7
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -1
Query: 474 IDRTLFLHHYLPAYIFKILLLAYIVDHIYVV 382
+D L HYL + F L+ + +D+I+++
Sbjct: 155 LDPKLIAKHYLRTWFFLDLISSIPLDYIFLI 185
>AF144379-1|AAD34586.1| 543|Apis mellifera glutamate transporter
Am-EAAT protein.
Length = 543
Score = 23.0 bits (47), Expect = 2.2
Identities = 8/27 (29%), Positives = 17/27 (62%)
Frame = -3
Query: 523 LYIISRLLVTLPTLLFYRSNSVPSSLF 443
L ++ L+TLPT+ ++ + P++ F
Sbjct: 321 LGLLFHALITLPTIFWFLTRQNPAAFF 347
>DQ325082-1|ABD14096.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 22.2 bits (45), Expect = 3.8
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -1
Query: 144 NHNKMYVVNNNCK 106
N+N Y NNNCK
Sbjct: 93 NNNYKYNYNNNCK 105
>U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodopsin
protein.
Length = 377
Score = 21.4 bits (43), Expect = 6.7
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -1
Query: 558 PPFVLNKFYET 526
PP V+N +YET
Sbjct: 107 PPMVINCYYET 117
Score = 21.4 bits (43), Expect = 6.7
Identities = 6/17 (35%), Positives = 11/17 (64%)
Frame = -1
Query: 522 YTLFLGYWLHYLPYFFI 472
Y + G W++++P F I
Sbjct: 216 YLVCYGIWVYFVPLFLI 232
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 21.4 bits (43), Expect = 6.7
Identities = 8/30 (26%), Positives = 16/30 (53%)
Frame = +3
Query: 93 VFNXLYNYYLQHTFYCDCNLIN*LWTSYFI 182
+F ++YYL + C L+ W S+++
Sbjct: 236 LFKREFSYYLIQIYIPCCMLVIVSWVSFWL 265
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 21.4 bits (43), Expect = 6.7
Identities = 8/30 (26%), Positives = 16/30 (53%)
Frame = +3
Query: 93 VFNXLYNYYLQHTFYCDCNLIN*LWTSYFI 182
+F ++YYL + C L+ W S+++
Sbjct: 236 LFKREFSYYLIQIYIPCCMLVIVSWVSFWL 265
>AY703752-1|AAU12748.1| 152|Apis mellifera long-wavelength
rhodopsin protein.
Length = 152
Score = 21.4 bits (43), Expect = 6.7
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -1
Query: 558 PPFVLNKFYET 526
PP V+N +YET
Sbjct: 73 PPMVINCYYET 83
>AF091732-1|AAD02869.2| 154|Apis mellifera long-wavelength
rhodopsin protein.
Length = 154
Score = 21.4 bits (43), Expect = 6.7
Identities = 6/17 (35%), Positives = 11/17 (64%)
Frame = -1
Query: 522 YTLFLGYWLHYLPYFFI 472
Y + G W++++P F I
Sbjct: 92 YLVCYGIWVYFVPLFLI 108
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,360
Number of Sequences: 438
Number of extensions: 2910
Number of successful extensions: 14
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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