Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_B16
(664 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 46 5e-06
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 33 0.049
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy... 30 0.26
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 28 1.4
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 27 1.8
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc... 26 4.2
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 26 5.6
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 25 7.4
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar... 25 7.4
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch... 25 7.4
SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|c... 25 7.4
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 46.0 bits (104), Expect = 5e-06
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = -3
Query: 554 GDGSNKSNPKIVASEIGTKSEPIWHEVKNQDGSSYYWNTITSETTWEQPDE 402
G SN+ P S+ WHEVK +D YY+N++T ++ WE+P+E
Sbjct: 16 GFTSNQEGPSAAPSKTVASD---WHEVKTEDSRVYYYNSVTRKSVWEKPEE 63
Score = 37.9 bits (84), Expect = 0.001
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 497 SEPIWHEVKNQDGSSYYWNTITSETTWEQPDEY 399
S+ W E DG Y++N T E+ W+ PDEY
Sbjct: 73 SKLAWKEYATADGKKYWYNVNTRESVWDIPDEY 105
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 32.7 bits (71), Expect = 0.049
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = -3
Query: 542 NKSNPKIVASEIGTKSEPIWHEVKNQDGSSYYWNTITSETTWEQPDE 402
N++ P I SE G + IW + + Y+W+T+T+ T+W P E
Sbjct: 178 NQAQPSIAWSE-GHRIAAIWDPSQQ---AYYFWDTLTNTTSWNNPLE 220
>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 30.3 bits (65), Expect = 0.26
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -3
Query: 491 PIWHEVKNQDGSSYYWNTITSETTWEQP 408
P W E K G YYWN ++T+++P
Sbjct: 7 PGWTEHKAPSGIPYYWNAELKKSTYQRP 34
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 27.9 bits (59), Expect = 1.4
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -2
Query: 600 EQCRFNFTEYKPNVGGRWK 544
+ C+FN ++Y P G +WK
Sbjct: 313 DACKFNISDYDPRKGFKWK 331
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/64 (26%), Positives = 25/64 (39%)
Frame = -3
Query: 599 NNADLTSQNINQMLGGDGSNKSNPKIVASEIGTKSEPIWHEVKNQDGSSYYWNTITSETT 420
+N SQ +N + SNP ++ S+ G W G Y+ + T TT
Sbjct: 275 HNTSSDSQRLNHQ-NRHLPDDSNPSLMQSDSGNDLPFGWEMRYTDTGRPYFVDHNTRTTT 333
Query: 419 WEQP 408
W P
Sbjct: 334 WVDP 337
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/63 (23%), Positives = 26/63 (41%)
Frame = -3
Query: 596 NADLTSQNINQMLGGDGSNKSNPKIVASEIGTKSEPIWHEVKNQDGSSYYWNTITSETTW 417
++ +T++ N SN + G + P W + G +YY + T TTW
Sbjct: 206 SSPVTNRQTNNTSALSNSNAHIMSSFEDQYG-RLPPGWERRADSLGRTYYVDHNTRTTTW 264
Query: 416 EQP 408
+P
Sbjct: 265 TRP 267
>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 581
Score = 26.2 bits (55), Expect = 4.2
Identities = 6/23 (26%), Positives = 16/23 (69%)
Frame = -3
Query: 491 PIWHEVKNQDGSSYYWNTITSET 423
P+ ++++ G +WNT+T+++
Sbjct: 529 PLGYDIREHPGGQQFWNTLTAKS 551
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -3
Query: 590 DLTSQNINQMLGGDGSNKSNPKIVAS 513
D+TS+++ L G+ SN +PKIV S
Sbjct: 180 DVTSRSVLSSLLGEMSNHCSPKIVLS 205
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 25.4 bits (53), Expect = 7.4
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = -1
Query: 166 KLLKNQQEPLTFSYRRQKSYLRHQLSWNLKSXNXKEKRGEIPGRRPWRXQKTKAE 2
KL++ L + KS + NL + + +KRG R ++ QKT+AE
Sbjct: 163 KLVEQISGSLEYKSEYDKSKDEQDKAVNLSAHSFNKKRGINAELRQYQEQKTEAE 217
>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
I|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 25.4 bits (53), Expect = 7.4
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +3
Query: 132 KVNGSCWFFNNFCP 173
K+N WFF FCP
Sbjct: 317 KLNSHLWFFQAFCP 330
>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 609
Score = 25.4 bits (53), Expect = 7.4
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 266 KERAVKKDESVLTKSAVDYGPAPRASKPYGTWTEIVKEP 150
++ A ++ S L K Y RAS PY T+T+ + +P
Sbjct: 34 EQSAYHRERSPLRKRGNYYDDRTRASGPYPTFTKPLIDP 72
>SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 334
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -3
Query: 485 WHEVKNQDGSSYYWNTITSETTWEQPDEYFS 393
+HE +N+ Y+WN +W+Q EY +
Sbjct: 173 FHEWQNKPRVEYFWN---ESGSWDQHHEYLT 200
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,460,475
Number of Sequences: 5004
Number of extensions: 46946
Number of successful extensions: 163
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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