Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_B16
(664 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0046 + 10928708-10928798,10929997-10930077,10930567-109306... 42 3e-04
01_05_0199 - 19174971-19175105,19176302-19176628,19176813-191769... 38 0.007
01_06_1796 - 39932487-39932633,39933150-39933201,39933370-399334... 32 0.47
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 29 2.5
10_08_0425 - 17806117-17806401,17806862-17806984,17807076-178072... 29 2.5
08_02_0260 + 14990324-14990916,14991055-14991245,14997427-149974... 28 5.8
05_06_0202 - 26339467-26339494,26339579-26339624,26339742-263397... 28 5.8
01_01_1122 + 8899946-8900043,8900191-8900291,8900416-8900945 28 7.6
>06_02_0046 +
10928708-10928798,10929997-10930077,10930567-10930685,
10931275-10931894,10931992-10933184,10933280-10933359,
10933751-10933846,10933931-10934004,10936007-10936151,
10936323-10936487
Length = 887
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/39 (46%), Positives = 24/39 (61%)
Frame = -3
Query: 521 VASEIGTKSEPIWHEVKNQDGSSYYWNTITSETTWEQPD 405
+ +IG + I HE NQ YYWNT+T ET+WE P+
Sbjct: 169 IVGDIGGNWKTIMHEQSNQ---CYYWNTVTGETSWEIPN 204
>01_05_0199 -
19174971-19175105,19176302-19176628,19176813-19176915,
19178852-19178916,19179941-19180048,19180213-19180305,
19180395-19180442,19180801-19180899,19180980-19181096,
19181186-19181239,19181312-19181404,19181776-19181881,
19182050-19182084,19182173-19182259,19182385-19182462,
19182528-19182596,19182682-19182780,19183644-19183685,
19184498-19184570,19184654-19184982,19185070-19185127,
19185217-19185269,19186075-19186144,19186276-19186337,
19186452-19186540,19186906-19187011,19187110-19187178,
19187295-19187330
Length = 900
Score = 37.9 bits (84), Expect = 0.007
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = -3
Query: 605 VQNNADLTSQNINQMLGGDGSNKSNPKIVASEIGTKSEPIWHEVKNQDGSSYYWNTITSE 426
VQ+ QN+ + G S+ + + S W E + DG YY+N T +
Sbjct: 71 VQSWGTAPGQNVPLVQPGHQPMSSSATMPSINSSETSSSDWQEHTSADGKKYYYNKKTRQ 130
Query: 425 TTWEQPDE 402
++WE+P E
Sbjct: 131 SSWEKPAE 138
Score = 36.7 bits (81), Expect = 0.016
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 485 WHEVKNQDGSSYYWNTITSETTWEQPDE 402
W E Q+G YY+N +T ++ W PDE
Sbjct: 152 WKEFTTQEGRKYYYNKVTKQSKWTIPDE 179
>01_06_1796 -
39932487-39932633,39933150-39933201,39933370-39933495,
39933645-39933743,39934039-39934258,39934599-39934764,
39935108-39935161,39935527-39935657,39935747-39935818,
39936524-39936602,39936705-39936783,39936868-39936902,
39936986-39937111
Length = 461
Score = 31.9 bits (69), Expect = 0.47
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -3
Query: 485 WHEVKNQD-GSSYYWNTITSETTWEQP 408
W E +Q G YY+NT T T WE P
Sbjct: 239 WEEALDQSTGQKYYYNTNTQATQWEPP 265
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -3
Query: 491 PIWHEVKNQ-DGSSYYWNTITSETTWEQP 408
P W E K+ G+SY++N T T W++P
Sbjct: 190 PGWVEAKDPTSGASYFYNQSTGTTQWDRP 218
>11_06_0767 +
27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
Frame = -3
Query: 464 DGSS-YYWNTITSETTWEQP 408
DGS+ YYWN T+ET +E+P
Sbjct: 31 DGSTLYYWNPDTNETQYERP 50
>10_08_0425 -
17806117-17806401,17806862-17806984,17807076-17807222,
17807307-17807450,17808557-17808668,17808762-17808898,
17809016-17809156,17810921-17811004,17811275-17811742,
17811858-17811936,17812494-17812506,17813884-17814460,
17814502-17814774,17814899-17815045,17815354-17815413,
17816124-17816510
Length = 1058
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Frame = -3
Query: 635 AAAMTAYIKDVQNNADLTSQNINQMLGGDGSNKSNP---KIVASEIGTKSEPIWHEVKNQ 465
++++TAY+ +Q T+ ++ L P ++ GT W V
Sbjct: 445 SSSVTAYLPSIQPPGVSTTDRDSKELSSANPGSEQPTRFRLRDKLAGTD----WSIVTTS 500
Query: 464 DGSSYYWNTITSETTWEQPDEYFSIV 387
DG YY++ ++W+ P E ++
Sbjct: 501 DGKKYYYDNKLKVSSWQLPPEVAELI 526
>08_02_0260 +
14990324-14990916,14991055-14991245,14997427-14997495,
14998134-14999221
Length = 646
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -3
Query: 533 NPKIVASEIGTKSEPIWHEVKNQDGSSYYWNTITSETTWEQP 408
+P+ V E T S P+W D NT+TS+ T P
Sbjct: 143 SPRTVGVEFDTFSNPMWDPEGTVDHVGIDVNTVTSKNTTAMP 184
>05_06_0202 -
26339467-26339494,26339579-26339624,26339742-26339785,
26340729-26340851,26341010-26341124,26341447-26342207,
26342305-26342711,26342798-26342900,26344642-26345144
Length = 709
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -3
Query: 599 NNADLTSQNINQMLGGDGSNKSNPKIVASEIGTKSEPIW 483
NN D + + G SNKS P++V + +P W
Sbjct: 287 NNFDFVRKESRPLYGNAKSNKSAPRVVRGRGSKRYQPHW 325
>01_01_1122 + 8899946-8900043,8900191-8900291,8900416-8900945
Length = 242
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -2
Query: 381 RKEKT*RRASRNKETKFKKRKTQGSH*RSQSTHGTREDEG 262
RK++ RR+ R + FK++ + RS+S+HG E G
Sbjct: 186 RKQERMRRSLRLRPASFKEKAVATAARRSRSSHGHGESGG 225
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,301,752
Number of Sequences: 37544
Number of extensions: 306184
Number of successful extensions: 923
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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