Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_B15
(675 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc... 122 6e-29
SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomy... 116 3e-27
SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde reduc... 108 8e-25
SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyc... 106 3e-24
SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism... 102 5e-23
SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomy... 84 2e-17
SPBC215.11c |||aldo/keto reductase, unknown biological role|Schi... 44 2e-05
SPCC965.06 |||potassium channel subunit |Schizosaccharomyces pom... 41 2e-04
SPCC1281.04 |||pyridoxal reductase |Schizosaccharomyces pombe|ch... 35 0.009
SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase YakC|Schizo... 35 0.012
SPCC737.06c |||glutamate-cysteine ligase regulatory subunit |Sch... 32 0.066
SPAC977.14c |||aldo/keto reductase, unknown biological role|Schi... 32 0.087
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 28 1.1
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak... 27 1.9
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 3.3
SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|c... 26 4.3
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 26 5.7
SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr 3|||... 25 7.6
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar... 25 7.6
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 25 10.0
>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 275
Score = 122 bits (293), Expect = 6e-29
Identities = 72/212 (33%), Positives = 120/212 (56%), Gaps = 1/212 (0%)
Frame = -2
Query: 665 NDKHARXQVVPALQESLKKLGLXYIDLYLIHFPIATKPDDSPDNIDYLETWQGMQDARQL 486
ND + ++ S+K GL YIDL+L+H P D +E+W+ ++ +
Sbjct: 81 NDLSGYKSTLSSIDASVKACGLGYIDLFLLHSPYG----------DRIESWKALEKGVEE 130
Query: 485 GLARSIGVSNFNATQITRLV-SNSYIRPVINQIEVNPTNTQEPLVAHCQSLGIAVMAYSP 309
G R+IGVSNF I L+ S+ I P +NQIE++P +Q+ +V +C+S GI + AY+P
Sbjct: 131 GKLRAIGVSNFGPHHIQELLDSHPKIIPCVNQIELHPFCSQQKVVDYCESKGIQLAAYAP 190
Query: 308 FGFVVSRGQTGAPPPRSDDPTLTALANKYRKSVGQILLRYLIDRGLIPIPKSTNKQRIAQ 129
+ G+ + + L A+A+KY KS QI++RY + RG I +PKS+ +RI +
Sbjct: 191 ----LVHGE------KFGNKQLLAIASKYNKSEAQIMIRYCLQRGFIVLPKSSTPRRIKE 240
Query: 128 NIDLFDFQLTFEEVAAINQFNKKHRGIDISDW 33
N D+FDF+++ E++ + ++ + SDW
Sbjct: 241 NGDVFDFEISKEDMEKLYNLDEDYH----SDW 268
>SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 321
Score = 116 bits (279), Expect = 3e-27
Identities = 77/220 (35%), Positives = 115/220 (52%), Gaps = 13/220 (5%)
Frame = -2
Query: 674 KLWNDKHARXQVVPALQESLKKLGLXYIDLYLIHFPIATK------PDDSPDNIDYL--- 522
KLW + HA V AL+++LK L L Y+D YLIH+P++ K P D N+ Y
Sbjct: 85 KLWCNAHAPEAVPKALEKTLKDLKLDYLDEYLIHWPVSFKTGEDKFPKDKDGNLIYEKNP 144
Query: 521 --ETWQGMQDARQLGLARSIGVSNFNATQITRLVSNSYIRPVINQIEVNPTNTQEPLVAH 348
ETW+ M+ + G R IG+SNFN T + R++ + ++P ++Q+E++P Q V
Sbjct: 145 IEETWKAMEKLLETGKVRHIGLSNFNDTNLERILKVAKVKPAVHQMELHPFLPQTEFVEK 204
Query: 347 CQSLGIAVMAYSPFGFVVSRGQTGAPPPRSDDPTLTALANKYRKSV--GQILLRYLIDRG 174
+ LGI V AYSPFG + ++ P + T+ +A + V I + + I RG
Sbjct: 205 HKKLGIHVTAYSPFGNQNTIYESKI-PKLIEHETIQKIAKSKGEGVTGATIAVSWAITRG 263
Query: 173 LIPIPKSTNKQRIAQNIDLFDFQLTFEEVAAINQFNKKHR 54
IPKS N+QRI N LT E++ IN + R
Sbjct: 264 TSVIPKSVNEQRIKSNFKY--IPLTKEDMDEINSIGIRAR 301
>SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde
reductase AKR3C2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 284
Score = 108 bits (259), Expect = 8e-25
Identities = 69/202 (34%), Positives = 102/202 (50%), Gaps = 2/202 (0%)
Frame = -2
Query: 656 HARXQVVPALQESLKKLGLXYIDLYLIHFPIATKPDDSPDNIDYLETWQGMQDARQLGLA 477
H + AL ESL+KLG Y+DLYL+H PI P + E W+ M+ A GL
Sbjct: 82 HNVDNIPEALNESLRKLGTDYLDLYLLHSPIPFYEKKIPIS----EGWKAMETALGTGLV 137
Query: 476 RSIGVSNFNATQITRLVSNSYIRPVINQIEVNPT--NTQEPLVAHCQSLGIAVMAYSPFG 303
S+GVSNF + L+ S I P +NQIE +P +PLV CQS GI V Y P
Sbjct: 138 HSVGVSNFRIPDLEELLKTSTITPRVNQIEFHPQVYKAAKPLVEFCQSKGIIVEGYGPLS 197
Query: 302 FVVSRGQTGAPPPRSDDPTLTALANKYRKSVGQILLRYLIDRGLIPIPKSTNKQRIAQNI 123
+V Q P ++ +L +KY S QILL++ +G+IPI ++ +R+ + +
Sbjct: 198 PLVRDAQ----GPVAE--FTKSLESKYHVSDTQILLKWAYSKGVIPITTTSKIERMKECL 251
Query: 122 DLFDFQLTFEEVAAINQFNKKH 57
+ F L ++ + +H
Sbjct: 252 NFDSFTLDKADIDELGTLGVQH 273
>SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 106 bits (254), Expect = 3e-24
Identities = 67/196 (34%), Positives = 106/196 (54%), Gaps = 2/196 (1%)
Frame = -2
Query: 632 ALQESLKKLGLXYIDLYLIHFPIATKPDDSPDNIDYLETWQGMQDARQLGLARSIGVSNF 453
A++ SL LG YIDL+LI P K + +W+ M++ G RS+GVSN+
Sbjct: 97 AIRSSLHHLGT-YIDLFLIQSPAGGKKSR-------IASWKAMEEFVDSGDIRSVGVSNY 148
Query: 452 NATQITRL-VSNSYIRPVINQIEVNPTNTQEPLVAHCQSLGIAVMAYSPFGFVVSRGQTG 276
+ L SN P +NQIE++P +Q+ +V +CQS IA+ AYSP +
Sbjct: 149 GVKHLQELYASNPKFYPCVNQIELHPFLSQDDIVKYCQSHDIAIEAYSPLTHGI------ 202
Query: 275 APPPRSDDPTLTALANKYRKSVGQILLRYLIDRGLIPIPKSTNKQRIAQNIDLFDFQLTF 96
R +D L +A K SV Q+L+R+ + +G IPI KST K+ + ++D+F+F +
Sbjct: 203 ----RLNDEKLVPIAKKLNISVAQLLIRWSLQKGYIPIIKSTKKEHMLSDLDVFNFTIPD 258
Query: 95 EEVAAINQFNKK-HRG 51
+ V ++ F++ H G
Sbjct: 259 DVVQELSSFDEHWHAG 274
>SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 102 bits (244), Expect = 5e-23
Identities = 71/220 (32%), Positives = 110/220 (50%), Gaps = 13/220 (5%)
Frame = -2
Query: 674 KLWNDKHARXQVVPALQESLKKLGLXYIDLYLIHFPIA--TKPDDSPDN---------ID 528
KLW + H V AL+++L+ L L YID YLIH+P A + P++ P N +
Sbjct: 84 KLWCNAHRAGLVPLALEKTLQDLNLEYIDAYLIHWPFALLSGPEELPRNEKGELIYEDVP 143
Query: 527 YLETWQGMQDARQLGLARSIGVSNFNATQITRLVSNSYIRPVINQIEVNPTNTQEPLVAH 348
ETWQ M++ + G R IG+SNFN + R++ + ++P I+Q+E++P Q +
Sbjct: 144 IEETWQAMEELLETGKVRYIGISNFNNEYLDRVLKIAKVKPTIHQMELHPYLPQTEYLEK 203
Query: 347 CQSLGIAVMAYSPFGFVVSRGQTGAPPPRSDDPTLTALANKYRKSV--GQILLRYLIDRG 174
+ L I V AYSP + + TL +AN + + I + + + RG
Sbjct: 204 HKKLQIHVSAYSPLA-NQNDAYNSDISKLIEHKTLVDIANARGEGITPANIAISWAVKRG 262
Query: 173 LIPIPKSTNKQRIAQNIDLFDFQLTFEEVAAINQFNKKHR 54
+PKS N+ RI N L+ LT +E+ AIN R
Sbjct: 263 TSVLPKSVNESRIVSNF-LY-IPLTDKEMEAINNIGVVRR 300
>SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 276
Score = 84.2 bits (199), Expect = 2e-17
Identities = 55/191 (28%), Positives = 101/191 (52%)
Frame = -2
Query: 632 ALQESLKKLGLXYIDLYLIHFPIATKPDDSPDNIDYLETWQGMQDARQLGLARSIGVSNF 453
A+++SL++ G +D+ LIH P P + +E+W+ + ++ G IGVSN+
Sbjct: 91 AVEQSLRRTGRPKLDVVLIHSP------KWP--VRRIESWRALLQHQKEGRINKIGVSNY 142
Query: 452 NATQITRLVSNSYIRPVINQIEVNPTNTQEPLVAHCQSLGIAVMAYSPFGFVVSRGQTGA 273
N + ++S P INQ+E + N + +++C + GI V A+SP ++RG
Sbjct: 143 NIHHLEEIISLGLPLPAINQVEFSAFNNRPTFLSYCFNHGILVQAFSP----LTRGY--- 195
Query: 272 PPPRSDDPTLTALANKYRKSVGQILLRYLIDRGLIPIPKSTNKQRIAQNIDLFDFQLTFE 93
R D L L+ KY K+ ILLRY + +G+ PI K+++ I +N+ F L
Sbjct: 196 ---RLSDIRLLDLSLKYNKTPANILLRYCLQKGVSPIFKASSFVHIHENVKAEQFMLDPS 252
Query: 92 EVAAINQFNKK 60
++ ++ ++++
Sbjct: 253 DMDVMDTWDEE 263
>SPBC215.11c |||aldo/keto reductase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 44.4 bits (100), Expect = 2e-05
Identities = 45/189 (23%), Positives = 83/189 (43%), Gaps = 3/189 (1%)
Frame = -2
Query: 620 SLKKLGLXYIDLYLIHFPIATKPDDSPDNIDYLETWQGMQDARQLGLARSIGVSNFNATQ 441
S+++LG+ IDL+ +H + D D M ++ GL R +G+S
Sbjct: 122 SMRRLGVKQIDLWQLH-----RIDPKVPRKDQFSEIAAM---KKEGLIRHVGLSEVTVDD 173
Query: 440 ITRLVSNSYIRPVINQIEVNPTNTQ-EPLVAHCQSLGIAVMAYSPFGFVVSRGQTGAPPP 264
I + Y V Q N N + E ++ +C+ GIA + + P ++ G P
Sbjct: 174 IKE--AEQYFPVVSVQNLFNLVNRKNEKVLEYCEQKGIAFIPWYP----LASGALAKP-- 225
Query: 263 RSDDPTLTALANKYRKSVGQILLRYLIDRG--LIPIPKSTNKQRIAQNIDLFDFQLTFEE 90
L A++ +S QI L +++ R ++PIP ++ + +N+ QL+ E
Sbjct: 226 ---GTILDAVSKDLDRSTSQIALSWVLQRSPVMLPIPGTSKVDHLEENVKAAGIQLSSEV 282
Query: 89 VAAINQFNK 63
A +++ K
Sbjct: 283 FAKLDEEGK 291
>SPCC965.06 |||potassium channel subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 344
Score = 40.7 bits (91), Expect = 2e-04
Identities = 42/162 (25%), Positives = 70/162 (43%), Gaps = 9/162 (5%)
Frame = -2
Query: 653 ARXQVVPALQESLKKLGLXYIDLYLIHFPIATKPDDSPDNIDYLETWQGMQDARQLGLAR 474
+R ++ L SLK+LGL Y+D+ + H +PD S + E + Q G A
Sbjct: 111 SRKHIIEGLNASLKRLGLPYVDVIMAH-----RPDPS---VPMEEVVRAFTQLIQDGKAF 162
Query: 473 SIGVSNFNATQITRL--VSNSY--IRPVINQIEVN---PTNTQEPLVAHCQSLGIAVMAY 315
G S ++A +I ++ Y I PV +Q + N + ++ L+ Q G +
Sbjct: 163 YWGTSEWSAFEIEHAHHIATKYNLIAPVADQPQYNYLTRDHFEKDLLPLQQIYGYGATVW 222
Query: 314 SPF--GFVVSRGQTGAPPPRSDDPTLTALANKYRKSVGQILL 195
SP G + + G P T T+LA + + G+ L
Sbjct: 223 SPLKSGILTGKYNDGIPEGSRLSTTFTSLAGQLQTPEGKTQL 264
>SPCC1281.04 |||pyridoxal reductase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 333
Score = 35.1 bits (77), Expect = 0.009
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = -2
Query: 236 LANKYRKSVGQILLRYLIDRG---LIPIPKSTNKQRIAQNIDLFDFQLTFEEVAAINQFN 66
LA K+ S+ + L ++I G +IPIP ST QR N+ L+ E++ +
Sbjct: 254 LAQKFGMSMPEFALNFIIANGKGMIIPIPGSTTVQRAESNLSALKKSLSSEQLEEAKKVL 313
Query: 65 KKHR 54
KH+
Sbjct: 314 DKHQ 317
>SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase
YakC|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 34.7 bits (76), Expect = 0.012
Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 5/115 (4%)
Frame = -2
Query: 632 ALQESLKKLGLXYIDLYLIHFPIATKPDDSPDNIDYLETWQGMQDARQLGLARSIGVSNF 453
AL SLK+LG+ IDLY +H P + + ++ + G R IG+S
Sbjct: 107 ALDLSLKRLGIDCIDLYYVHRFSGETPIE--------KIMGALKKCVEAGKIRYIGLSEC 158
Query: 452 NATQITRLVSNSYIRPVINQIEVNP--TNTQEP---LVAHCQSLGIAVMAYSPFG 303
+A I R + + V Q+E +P + P ++ C+ I ++ Y+P G
Sbjct: 159 SANTIRRAAAVYPVSAV--QVEYSPFSLEIERPEIGVMKACRENNITIVCYAPLG 211
>SPCC737.06c |||glutamate-cysteine ligase regulatory subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 287
Score = 32.3 bits (70), Expect = 0.066
Identities = 13/48 (27%), Positives = 28/48 (58%)
Frame = -2
Query: 527 YLETWQGMQDARQLGLARSIGVSNFNATQITRLVSNSYIRPVINQIEV 384
+++TW+ +++ G ++GVS F ++ RL+S+ + P QI +
Sbjct: 158 WVDTWKLLEEKVGEGKIGTLGVSEFGVNELQRLISSVNVVPESTQINI 205
>SPAC977.14c |||aldo/keto reductase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 351
Score = 31.9 bits (69), Expect = 0.087
Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 6/121 (4%)
Frame = -2
Query: 653 ARXQVVPALQESLKKLGLXYIDLYLIHFPIATKPDDSPDNIDYLETWQGMQDARQLGLAR 474
+R + A+++S+K+LG YID+ IH P S + E + + D + G R
Sbjct: 131 SRKHIFDAVEDSVKRLGT-YIDVLQIH---RYDPHVSAE-----EVMRALNDVVESGKVR 181
Query: 473 SIGVSNFNATQITRLVSNS----YIRPVINQIEVNPTNTQEP--LVAHCQSLGIAVMAYS 312
IG S Q L + + + + + Q N +E ++ +CQ G+ ++ +S
Sbjct: 182 YIGASTMRCYQFIELQNTAEKHGWHKFISMQNYHNLLYREEEREMIPYCQKTGVGLIPWS 241
Query: 311 P 309
P
Sbjct: 242 P 242
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 28.3 bits (60), Expect = 1.1
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = -2
Query: 209 GQILLRYLIDRGLIPIPKSTNKQRIAQNIDLFDFQLT-FEEVAAINQFNKKHRGIDISDW 33
G+ L + I GLIP P S + + + + +LT E V IN+ +KH + D
Sbjct: 313 GKSTLLHAIACGLIPTPSSLDFYLLDR--EYIPNELTCVEAVLDINEQERKHLEAMMEDL 370
Query: 32 KDDPNE 15
DDP++
Sbjct: 371 LDDPDK 376
>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 708
Score = 27.5 bits (58), Expect = 1.9
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Frame = +3
Query: 375 CRIHLNLVNNRPDVTVAD---QSRDLRSVEVGY-SNGP 476
CR NL+N P++TVA ++ DL+ V SNGP
Sbjct: 443 CRFRRNLINLLPEITVAHFEAEALDLKFVAKSLPSNGP 480
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.6 bits (56), Expect = 3.3
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Frame = -2
Query: 245 LTALANKYRKSVGQILLRYLID--RGLI---PIPKSTNKQRIAQNIDLFDFQLTFEEVAA 81
L+AL KS + YL++ RG I P+P T K++ A + + F+ F +
Sbjct: 2189 LSALVQIIEKSSSYEICNYLLEIVRGWIMNSPVPVPTVKEKAALLLKMVTFEGRFSQNEQ 2248
Query: 80 INQFNK 63
+ FNK
Sbjct: 2249 NDLFNK 2254
>SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 521
Score = 26.2 bits (55), Expect = 4.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 569 PIATKPDDSPDNIDYLETWQGMQDARQL 486
P+AT D + ++D L T QG+ D R L
Sbjct: 428 PMATHVDQTEHDLDILVTEQGLADLRGL 455
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 25.8 bits (54), Expect = 5.7
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Frame = -2
Query: 470 IGVSNFNATQI-TRLVSNSY-IRP-VINQIEVNPTNTQEPLVAHCQSLGIAVMAYSPFGF 300
+ SNF+A+ I RL S + I P V+ Q +V+ + + + QS +++ FG
Sbjct: 309 VSKSNFHASNIGNRLFSAALSIFPLVLLQSDVSAVQSSLLIGLYLQSTIYEKSSFAYFGL 368
Query: 299 VVSRGQTGAPPPRSDDPTLTALANKYR 219
+ SDDP+LT + + R
Sbjct: 369 AIKFAVALGLHKNSDDPSLTQNSKELR 395
>SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 319
Score = 25.4 bits (53), Expect = 7.6
Identities = 14/61 (22%), Positives = 26/61 (42%)
Frame = +3
Query: 57 MLLVKLVNGRYLFKRQLEIE*IDVLSDPLLVCGFRNRD*TSVDQISE*NLSNTLPVFISE 236
++ +K + G YL R + LS PL+ C +D++ + + + IS
Sbjct: 48 LVFLKKIRGAYLKDRTFSN--VQRLSKPLMECSLEELSKLELDEVQRDEIEHEVSSAISS 105
Query: 237 C 239
C
Sbjct: 106 C 106
>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 404
Score = 25.4 bits (53), Expect = 7.6
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 281 SDHATPRTRTDCTPSRRYRDSGSVPLAALVCL*DSPQS 394
S+H +P + + PSR SGS+ + L L D +S
Sbjct: 147 SNHPSPISSLESLPSRSSTGSGSLDFSGLANLHDDSKS 184
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 25.0 bits (52), Expect = 10.0
Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Frame = -2
Query: 155 STNKQRIAQNIDLFDFQLTFEEVA--AINQFN----KKHRGIDISDW 33
S+NK RI+ N++ ++ +F+E N+FN K++ D+ ++
Sbjct: 79 SSNKNRISSNVEGYEDDFSFDEEGEEGNNEFNTLRPNKYQDADVDEF 125
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,797,266
Number of Sequences: 5004
Number of extensions: 58035
Number of successful extensions: 188
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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