Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_B15
         (675 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.7  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   3.5  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   3.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.5  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   4.7  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   4.7  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   4.7  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    21   8.1  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 187 KYLSRICPTLFLYLLASAVRVGSS 258
           KY++ +   LFL++   AV VG++
Sbjct: 512 KYVAMVLDRLFLWIFTLAVLVGTA 535


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 187 KYLSRICPTLFLYLLASAVRVGSS 258
           KY++ +   LFL++   AV VG++
Sbjct: 512 KYVAMVLDRLFLWIFTLAVLVGTA 535


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 187 KYLSRICPTLFLYLLASAVRVGSS 258
           KY++ +   LFL++   AV VG++
Sbjct: 507 KYVAMVLDRLFLWIFTLAVVVGTA 530


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 338 LGIAVMAYSPFGFV 297
           +GI +M YSPFG +
Sbjct: 279 VGIIIMWYSPFGIM 292


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = -2

Query: 404 VINQIEVNPTNTQEPLVAHCQSLGIAVMAYSPFGFVVSRGQTGAPPPR 261
           V++Q+E+     ++ L A    L +A    SP     S   TG+  P+
Sbjct: 322 VVSQLEIQLQKERDRLTAMMHHLHVAKQMASPEPPKSSESSTGSSIPK 369


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +3

Query: 399 NNRPDVTVADQSRDLRSVEVGYS 467
           +NRP++   D+++DL SV   ++
Sbjct: 675 SNRPNLLFKDEAKDLVSVNKSWN 697


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +3

Query: 399 NNRPDVTVADQSRDLRSVEVGYS 467
           +NRP++   D+++DL SV   ++
Sbjct: 675 SNRPNLLFKDEAKDLVSVNKSWN 697


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +3

Query: 399 NNRPDVTVADQSRDLRSVEVGYS 467
           +NRP++   D+++DL SV   ++
Sbjct: 675 SNRPNLLFKDEAKDLVSVNKSWN 697


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 284 DHATPRTRTDCT 319
           D ATPRT T+C+
Sbjct: 8   DLATPRTGTNCS 19


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,188
Number of Sequences: 438
Number of extensions: 4136
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)