Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_B13
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase...   115   7e-27
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    78   1e-15
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...    64   1e-11
SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|...    26   5.5  
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc...    25   7.3  
SPAC16C9.02c |||S-methyl-5-thioadenosine phosphorylase|Schizosac...    25   9.6  

>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
           Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 112

 Score =  115 bits (276), Expect = 7e-27
 Identities = 51/74 (68%), Positives = 60/74 (81%)
 Frame = -3

Query: 655 GXKFDSSRDRGKPFKFRIGKSEVIRGWDEGVAKMSVGERAKLTCSPDYAYGQQGHPGVIP 476
           G KFDSS DRG PF   IG  ++IRGWDEGV KMS+GE+AKLT +PDY YG +G PG+IP
Sbjct: 34  GKKFDSSVDRGSPFVCTIGVGQLIRGWDEGVPKMSLGEKAKLTITPDYGYGPRGFPGLIP 93

Query: 475 PNSTLIFDVELLRL 434
           PNSTL+FDVELL +
Sbjct: 94  PNSTLLFDVELLAI 107


>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 77.8 bits (183), Expect = 1e-15
 Identities = 39/74 (52%), Positives = 49/74 (66%)
 Frame = -3

Query: 655 GXKFDSSRDRGKPFKFRIGKSEVIRGWDEGVAKMSVGERAKLTCSPDYAYGQQGHPGVIP 476
           G  FD +  +GKPF F +G+ EVIRGWD GVA M  G   K+T     AYG Q  PG IP
Sbjct: 289 GKVFDKNT-KGKPFAFILGRGEVIRGWDVGVAGMQEGGERKITIPAPMAYGNQSIPG-IP 346

Query: 475 PNSTLIFDVELLRL 434
            NSTL+F+V+L+R+
Sbjct: 347 KNSTLVFEVKLVRV 360


>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score = 64.5 bits (150), Expect = 1e-11
 Identities = 34/72 (47%), Positives = 42/72 (58%)
 Frame = -3

Query: 655 GXKFDSSRDRGKPFKFRIGKSEVIRGWDEGVAKMSVGERAKLTCSPDYAYGQQGHPGVIP 476
           G  FD +   GKPF F +G  EVI+GWD G+  M VG    +      AYG +  PG IP
Sbjct: 290 GKVFDKNIT-GKPFTFNLGLEEVIKGWDVGIVGMQVGGERTIHIPAAMAYGSKRLPG-IP 347

Query: 475 PNSTLIFDVELL 440
            NS L+FDV+LL
Sbjct: 348 ANSDLVFDVKLL 359


>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -3

Query: 313 YTNIVYL*WKYIYIYAIRKNFIL*VNKFMVRLINEIL 203
           +  I+Y  W  +  + I   + L V KF+V+L+++I+
Sbjct: 3   FATILYSIWVVLSSFVILSAYQLEVRKFLVKLLSKIV 39


>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 920

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +3

Query: 516 SGEQVNLARSPTDIFATPSSQPRITSDFPILNLKGLPRSRDESN 647
           +G   NLAR P+D+   P +    +S      L  LP+   E N
Sbjct: 216 AGSVPNLARIPSDVKPVPPAHLSASSTVGPRILPSLPKDTTEDN 259


>SPAC16C9.02c |||S-methyl-5-thioadenosine
           phosphorylase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -3

Query: 625 GKPFKFRIGKSEVIRGWDEGVAKMSVGERAKLTCSPDYAY 506
           G  F  R  +S + R W   +  MSV   AKL    + AY
Sbjct: 176 GPAFSTR-AESNLYRSWGASIINMSVIPEAKLAREAEIAY 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,491,655
Number of Sequences: 5004
Number of extensions: 48132
Number of successful extensions: 96
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)