Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_B12
         (721 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL033514-37|CAA22087.2|  441|Caenorhabditis elegans Hypothetical...    30   1.9  
U80447-8|AAB37812.3|  900|Caenorhabditis elegans Patched related...    28   5.8  
U21323-12|AAA62554.2|  354|Caenorhabditis elegans Hypothetical p...    28   7.7  

>AL033514-37|CAA22087.2|  441|Caenorhabditis elegans Hypothetical
           protein Y75B8A.27 protein.
          Length = 441

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = -3

Query: 506 LNFKYQFIVFLKYEITYNCEFDYIWS*I*CINSVNGYQKRICFFN 372
           ++++YQ ++ L YE++ NC    +W+   C NS+  Y K I  +N
Sbjct: 362 IDYEYQSML-LNYEVSKNCTITNLWT--QCWNSLLPYVKTIINYN 403


>U80447-8|AAB37812.3|  900|Caenorhabditis elegans Patched related
           family protein 10 protein.
          Length = 900

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 159 CVSTLCSLRIIDVNPMFFFC*MLKFYNKI 245
           C+ T+C+L +     + FFC +L +Y +I
Sbjct: 407 CIYTMCALLLTFAYQLTFFCAILVYYTRI 435


>U21323-12|AAA62554.2|  354|Caenorhabditis elegans Hypothetical
           protein C45G9.11 protein.
          Length = 354

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
 Frame = +3

Query: 273 YTLDLYEVLILICKVKFNKETINFPRAYV*LLRVEKTNSFLVT----VYRIYALNSTPNV 440
           YT+ +Y+V + +  +   +  +NF +A + +  +    SF +     ++ I++L S P  
Sbjct: 249 YTIAVYDVALFVIAIATARALVNFDKAVLHIHYIFCIFSFFINFFFLIFSIWSLVS-PGS 307

Query: 441 IKFT-IICYFIF 473
           + FT I C  IF
Sbjct: 308 LTFTPINCLLIF 319


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,847,360
Number of Sequences: 27780
Number of extensions: 305894
Number of successful extensions: 466
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)