Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_B07
         (317 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   1.6  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   4.7  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   4.7  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    20   6.3  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    20   8.3  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 99  HLHHQRLLYPNFP 137
           HLHH ++LY   P
Sbjct: 75  HLHHHQVLYQQSP 87


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = -3

Query: 120 EDADDEDVSVWEDNWEDDXIQDDFNQQLRQQLEKXEGSR 4
           +D DD+DV        +  + D F+ Q   + +   G+R
Sbjct: 398 DDDDDDDVEAANGKPAEGMLTDVFHVQETDKYDAYYGNR 436


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 87  EDNWEDDXIQDDFNQQLRQQLEKXEG 10
           E+N E + IQD FN Q   ++    G
Sbjct: 291 ENNIEYEGIQDIFNTQSSAKVMSKNG 316


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
          protein precursor protein.
          Length = 153

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +3

Query: 75 PSCLPKPI 98
          P C+PKPI
Sbjct: 41 PGCVPKPI 48


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 6/20 (30%), Positives = 11/20 (55%)
 Frame = -3

Query: 129 WGTEDADDEDVSVWEDNWED 70
           WG   + D+  S W+ ++ D
Sbjct: 187 WGEGSSGDDLSSEWDSDYTD 206


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,584
Number of Sequences: 438
Number of extensions: 1236
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6844365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)