Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_B06
(726 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0223 + 21047240-21047304,21047577-21047706,21048783-210488... 37 0.019
06_02_0338 - 14723277-14723444,14724564-14724836,14735044-147351... 33 0.17
12_02_0298 + 17041206-17041712 30 1.6
03_05_0871 + 28396964-28399843 29 2.8
02_05_0140 - 26218828-26219759,26219885-26220002,26220089-262202... 29 2.8
12_02_0384 + 18409831-18409843,18410378-18410471,18410614-184107... 29 3.8
09_04_0529 + 18356964-18358307,18359829-18359944,18360036-183601... 29 5.0
05_07_0235 + 28575293-28575551,28577346-28577521,28579838-285800... 29 5.0
01_05_0658 - 24043655-24043945,24044003-24044257,24044359-240445... 29 5.0
01_02_0010 + 10142450-10142570,10142811-10142965,10143295-101434... 29 5.0
12_01_0541 + 4251931-4254141 28 6.6
09_06_0313 + 22240971-22242176 28 8.7
>02_04_0223 +
21047240-21047304,21047577-21047706,21048783-21048871,
21049592-21049647,21049721-21049776,21050163-21050202,
21050505-21050629,21050715-21050808,21051401-21051480,
21051598-21051640,21057539-21057630,21057746-21057919
Length = 347
Score = 36.7 bits (81), Expect = 0.019
Identities = 20/57 (35%), Positives = 32/57 (56%)
Frame = -1
Query: 708 LPEHLKDKVEIVKGNVLEPDSVHEAVEGTDAVVITLGTRNDLAPTSDLSEGTKNIID 538
+ E DKV KGN+LEPDS+ + +EG AVV + + P +S G ++++
Sbjct: 101 ISESWADKVIWNKGNLLEPDSLKDIMEGVSAVVPFIRLLDLKLPRGSMSTGLISMME 157
>06_02_0338 -
14723277-14723444,14724564-14724836,14735044-14735160,
14735276-14735593
Length = 291
Score = 33.5 bits (73), Expect = 0.17
Identities = 36/137 (26%), Positives = 64/137 (46%), Gaps = 13/137 (9%)
Frame = -1
Query: 684 VEIVKGNVLE-PDSVHEAVEGTDAVVITLGTR---NDLAPTSDLSEGTKNIIDAMRAKNV 517
+++V+ +V+E D + +A+ G DAVV G R + AP + GT N+++A R V
Sbjct: 104 LQLVRADVMEGTDKLVDAIRGADAVVCATGFRRSFDPFAPWKVDNFGTVNLVEACRKAGV 163
Query: 516 KTVSACLSAFLFYEQ---EKVPPIFVNLN------EDHKRMFQALKDSGLNWIAAFPPHF 364
T +S+ L + + P + LN + + ++ SG+N+ P
Sbjct: 164 -TRFILVSSILVNGAAMGQLLNPAYTVLNLFGLVLVAKLQAEKHIRSSGINYTIIRPGGL 222
Query: 363 TDDPSREMIIEVNPEKT 313
T+ P I+ + PE T
Sbjct: 223 TEQPPTGNIV-MEPEDT 238
>12_02_0298 + 17041206-17041712
Length = 168
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Frame = +3
Query: 165 IGYIKLITTIGSFILWAHCRCQWL----PCSIWVRKARP 269
+G + + +G W HCR W P S W + +P
Sbjct: 107 VGLVAAVDLVGGACCWCHCRACWTEPSPPNSAWSKSGKP 145
>03_05_0871 + 28396964-28399843
Length = 959
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +3
Query: 117 KLQGKKCKNILLTLRHIGYIKLITTIGSFIL 209
KLQG+ +N+LL H IK IT GS+I+
Sbjct: 815 KLQGRVHRNLLLEDPHFSCIKSITLSGSWIV 845
>02_05_0140 -
26218828-26219759,26219885-26220002,26220089-26220278,
26220380-26220514,26220617-26220714,26221697-26221866,
26222586-26222961
Length = 672
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = +2
Query: 371 GGNAA--IQFKPLSFRAWNILLWSSFKLTKIGGTFSCS 478
GGNA +QF +AW + F LT +G CS
Sbjct: 240 GGNACGFVQFPTFGLKAWKQSFFFDFSLTYVGAGMICS 277
>12_02_0384 +
18409831-18409843,18410378-18410471,18410614-18410734,
18411635-18412543,18412772-18413211,18413481-18414516
Length = 870
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -3
Query: 187 VISLIYPICRKVKRIFLHFFPC-NFXYI 107
+ISLI+ C K+I LH PC F Y+
Sbjct: 658 MISLIFEECHNAKKISLHRLPCTGFQYL 685
>09_04_0529 +
18356964-18358307,18359829-18359944,18360036-18360133,
18360234-18360418
Length = 580
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 578 GARSFLVPRVMTTASVPSTASCTESGSRTF 667
GA L+PR TT++ + A ESG+ TF
Sbjct: 320 GAGQRLIPRTTTTSASGACAGADESGNETF 349
>05_07_0235 +
28575293-28575551,28577346-28577521,28579838-28580041,
28580177-28580330,28580434-28580780
Length = 379
Score = 28.7 bits (61), Expect = 5.0
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Frame = -1
Query: 726 VRDPAKLPEHLKDKVEIVKGNVLEPDSVHEAVEGTDAVVITLGTRNDLAPTSDLSEGTKN 547
+R+ E+ +D V V NV++P+S+++A G V T + L +S TK+
Sbjct: 92 LREMEMFGENGRDGVWTVMANVMDPESLNQAFNGCVGVFHT----SSLIDPGGISGYTKH 147
Query: 546 --IIDAMRAKNVKTVSACL 496
I++A A+ V V AC+
Sbjct: 148 MAILEARAAEQV--VEACV 164
>01_05_0658 -
24043655-24043945,24044003-24044257,24044359-24044530,
24044617-24044844,24045688-24045821,24045908-24045991,
24046202-24046492,24046571-24046903,24047002-24047246,
24047476-24047742,24048305-24048465,24048556-24048872,
24048966-24049247,24049325-24049626,24049699-24049789,
24049881-24049934,24050028-24050104,24050192-24050367,
24051331-24051540,24051626-24052029
Length = 1457
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = -1
Query: 717 PAKLPEHLKDKVEIVKGNVLEPDSVHEAVEGTDAVVITLGTRNDLAPTS 571
P+ E LK+K + GNVL+ D++ A A+V + GT +++A S
Sbjct: 787 PSISEEELKEKQANINGNVLDVDTM--ASSNNLAIVGSTGTGSEIADNS 833
>01_02_0010 +
10142450-10142570,10142811-10142965,10143295-10143477,
10143691-10144043,10144220-10144388
Length = 326
Score = 28.7 bits (61), Expect = 5.0
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = -1
Query: 702 EHLKDKVEIVKGNVLEPDSVHEAVEGTDAVVITLGTRND---LAPTSDLSEGTKNIIDAM 532
E K ++ + + +VL+ +S+ A D V +D L PT+ EGTKN+I+A
Sbjct: 52 ERAKRRLSLHRADVLDCNSLRAAFNLCDGVFHVASPVSDDPELLPTA--IEGTKNVINAA 109
Query: 531 RAKNVKTV 508
+K V
Sbjct: 110 ADMGIKRV 117
>12_01_0541 + 4251931-4254141
Length = 736
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/53 (32%), Positives = 30/53 (56%)
Frame = +2
Query: 404 SFRAWNILLWSSFKLTKIGGTFSCS*NKNADKQADTVLTFFALIASIMFLVPS 562
SFR +++W+ F L G +CS + AD+QA T+++ + +M L+ S
Sbjct: 85 SFRNDMVVVWACFLLGCADGIAACSLD-GADQQARTMISQATQVFYVMLLLIS 136
>09_06_0313 + 22240971-22242176
Length = 401
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Frame = -3
Query: 292 VRPRHIPSGRAFRTQI---LQGSHWHLQCAQRMKEPIV 188
+RP HIP A R +HWH CA + P V
Sbjct: 7 LRPAHIPRSTAVRPPCATPFSRAHWHATCAAIRRVPRV 44
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,463,623
Number of Sequences: 37544
Number of extensions: 387259
Number of successful extensions: 955
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -