Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_B06
         (726 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L16685-2|AAY43982.1|  262|Caenorhabditis elegans Hypothetical pr...    31   0.84 
Z78540-6|CAD30431.1|  887|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z78540-5|CAB01738.2|  793|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z72501-3|CAD30430.1|  887|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AJ133838-1|CAB44432.1|  793|Caenorhabditis elegans DYC-1 protein...    30   1.9  
Z74042-17|CAA98537.1|  688|Caenorhabditis elegans Hypothetical p...    28   5.9  
AL031623-1|CAA20938.1|  688|Caenorhabditis elegans Hypothetical ...    28   5.9  
U23527-5|AAC46572.2|  915|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>L16685-2|AAY43982.1|  262|Caenorhabditis elegans Hypothetical
           protein ZC21.9 protein.
          Length = 262

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +2

Query: 272 RNVPRSHLAMVLPGVFSGFTSIIISRLGSSV-KCGGNA 382
           R+   +HLA V+PGVF+   ++ I++L SS   C  N+
Sbjct: 13  RDQRHAHLAQVVPGVFTSLVALSIAQLTSSCPSCNTNS 50


>Z78540-6|CAD30431.1|  887|Caenorhabditis elegans Hypothetical
           protein C33G3.1b protein.
          Length = 887

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 23  PYSSLXINLASQQVAXSXHLGSHLNX*SYIXKITRKKM 136
           PY++L +N+ SQQ+    H GS +    Y  ++ R ++
Sbjct: 403 PYATLQLNMQSQQLDQPDHSGSQITMDQYNQQLMRSQL 440


>Z78540-5|CAB01738.2|  793|Caenorhabditis elegans Hypothetical
           protein C33G3.1a protein.
          Length = 793

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 23  PYSSLXINLASQQVAXSXHLGSHLNX*SYIXKITRKKM 136
           PY++L +N+ SQQ+    H GS +    Y  ++ R ++
Sbjct: 309 PYATLQLNMQSQQLDQPDHSGSQITMDQYNQQLMRSQL 346


>Z72501-3|CAD30430.1|  887|Caenorhabditis elegans Hypothetical
           protein C33G3.1b protein.
          Length = 887

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 23  PYSSLXINLASQQVAXSXHLGSHLNX*SYIXKITRKKM 136
           PY++L +N+ SQQ+    H GS +    Y  ++ R ++
Sbjct: 403 PYATLQLNMQSQQLDQPDHSGSQITMDQYNQQLMRSQL 440


>AJ133838-1|CAB44432.1|  793|Caenorhabditis elegans DYC-1 protein
           protein.
          Length = 793

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 23  PYSSLXINLASQQVAXSXHLGSHLNX*SYIXKITRKKM 136
           PY++L +N+ SQQ+    H GS +    Y  ++ R ++
Sbjct: 309 PYATLQLNMQSQQLDQPDHSGSQITMDQYNQQLMRSQL 346


>Z74042-17|CAA98537.1|  688|Caenorhabditis elegans Hypothetical
           protein T11F9.12 protein.
          Length = 688

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 599 PRVMTTASVPSTASCTESGSRTFPLTISTLSLR 697
           P+  TT ++PST + TES S +   + +T  +R
Sbjct: 132 PQTTTTTTIPSTTTMTESSSTSTTASPTTTRIR 164


>AL031623-1|CAA20938.1|  688|Caenorhabditis elegans Hypothetical
           protein T11F9.12 protein.
          Length = 688

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 599 PRVMTTASVPSTASCTESGSRTFPLTISTLSLR 697
           P+  TT ++PST + TES S +   + +T  +R
Sbjct: 132 PQTTTTTTIPSTTTMTESSSTSTTASPTTTRIR 164


>U23527-5|AAC46572.2|  915|Caenorhabditis elegans Hypothetical
           protein K09E2.1 protein.
          Length = 915

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 596 VPRVMTTASVPSTASCTESGSRTFPLTISTLS 691
           VP   T+ +VPST   T S SRT   + +T S
Sbjct: 582 VPSTTTSVTVPSTQKATPSPSRTTKKSTTTTS 613


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,766,724
Number of Sequences: 27780
Number of extensions: 332694
Number of successful extensions: 940
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)