Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_B06
(726 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate r... 23 2.2
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 22 6.8
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 22 6.8
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 22 6.8
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 22 6.8
AF388659-1|AAK71995.1| 782|Apis mellifera 1D-myo-inositol-trisp... 22 6.8
DQ863218-1|ABI94394.1| 399|Apis mellifera tyramine receptor pro... 21 9.0
DQ863217-1|ABI94393.1| 399|Apis mellifera tyramine receptor pro... 21 9.0
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 21 9.0
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 21 9.0
AJ245824-1|CAB76374.1| 399|Apis mellifera G-protein coupled rec... 21 9.0
>AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate
receptor 1 protein.
Length = 953
Score = 23.4 bits (48), Expect = 2.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 281 PRSHLAMVLPGVFSGFTSIIIS 346
PRS A VL V++GF II++
Sbjct: 631 PRSFSARVLGMVWAGFAMIIVA 652
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 21.8 bits (44), Expect = 6.8
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -1
Query: 717 PAKLPEHLKDKVEIVKGNVLEPDSVH 640
P +LP+HL + K V+E +H
Sbjct: 376 PTELPKHLPTSLTKSKMEVMELSDLH 401
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 21.8 bits (44), Expect = 6.8
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 5/27 (18%)
Frame = +1
Query: 646 RVWF-----ENISFDYLDLVFKMFWEF 711
R WF +I DY+ L+F F +F
Sbjct: 166 RTWFFLDLISSIPLDYIFLIFNQFQDF 192
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 21.8 bits (44), Expect = 6.8
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 5/27 (18%)
Frame = +1
Query: 646 RVWF-----ENISFDYLDLVFKMFWEF 711
R WF +I DY+ L+F F +F
Sbjct: 166 RTWFFLDLISSIPLDYIFLIFNQFQDF 192
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 21.8 bits (44), Expect = 6.8
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 5/27 (18%)
Frame = +1
Query: 646 RVWF-----ENISFDYLDLVFKMFWEF 711
R WF +I DY+ L+F F +F
Sbjct: 166 RTWFFLDLISSIPLDYIFLIFNQFQDF 192
>AF388659-1|AAK71995.1| 782|Apis mellifera
1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
Length = 782
Score = 21.8 bits (44), Expect = 6.8
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -3
Query: 49 KIDXKRRVGIMEN 11
+I KRRVGI+EN
Sbjct: 108 QITRKRRVGIVEN 120
>DQ863218-1|ABI94394.1| 399|Apis mellifera tyramine receptor
protein.
Length = 399
Score = 21.4 bits (43), Expect = 9.0
Identities = 9/30 (30%), Positives = 13/30 (43%)
Frame = +3
Query: 192 IGSFILWAHCRCQWLPCSIWVRKARPLGMC 281
+G +I H WL C + A L +C
Sbjct: 99 LGKWIFGIHLCKLWLTCDVLCCTASILNLC 128
>DQ863217-1|ABI94393.1| 399|Apis mellifera tyramine receptor
protein.
Length = 399
Score = 21.4 bits (43), Expect = 9.0
Identities = 9/30 (30%), Positives = 13/30 (43%)
Frame = +3
Query: 192 IGSFILWAHCRCQWLPCSIWVRKARPLGMC 281
+G +I H WL C + A L +C
Sbjct: 99 LGKWIFGIHLCKLWLTCDVLCCTASILNLC 128
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 21.4 bits (43), Expect = 9.0
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = +3
Query: 372 AETRRSNLSRCLSEPGTFSCGLRSN 446
AE S + P TF+C +R N
Sbjct: 310 AEIEPSTQTIDFGRPATFTCNVRGN 334
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 21.4 bits (43), Expect = 9.0
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -1
Query: 588 DLAPTSDLSEGTKNIIDAMRAKNVKT 511
D+ P EG+K I + KNV T
Sbjct: 159 DVIPIRRTGEGSKPIFEREEIKNVLT 184
>AJ245824-1|CAB76374.1| 399|Apis mellifera G-protein coupled
receptor protein.
Length = 399
Score = 21.4 bits (43), Expect = 9.0
Identities = 9/30 (30%), Positives = 13/30 (43%)
Frame = +3
Query: 192 IGSFILWAHCRCQWLPCSIWVRKARPLGMC 281
+G +I H WL C + A L +C
Sbjct: 99 LGKWIFGIHLCKLWLTCDVLCCTASILNLC 128
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,807
Number of Sequences: 438
Number of extensions: 3958
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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